Gene detail

Detail information of GWHGAAEX012279/evm.TU.scaffold_42.77

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|108760510\|ref\|YP_632759.1\|	7.00E-20	serine/threonine-protein kinase PKN1 [Myxococcus xanthus DK 1622]
KOG	KOG1164	0	Casein kinase (serine/threonine/tyrosine protein kinase)
nr	gi\|672119974\|ref\|XP_008783238.1\|	0	PREDICTED: casein kinase I-like [Phoenix dactylifera]
Swissprot	tr\|P42158\|KC1D_ARATH	2.00E-176	Casein kinase I isoform delta-like
trEMBL	tr\|M0THI4\|M0THI4_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P14470_001}
TAIR	AT4G28880	0	casein kinase I-like 3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000050	1771503	1783859	-

Transcript Sequence
>GWHTAAEX012279 GGCTCGGTCTAAGACGAAATAAATAAAGAAGGTCAGAAAAGGCGGTTCATTTTCCTGCCCGACGAATTTCTCTGCGCCCCGTAATTCTGTTGTCCCGGAATCGCCCTGCTCGTCCTCTTCCCTCTCCGCCCTCTGCCTTCTGAGCTATCCCATCCGCAACCCTATCTTTTCAACTTCCACAATAGCCTAAATCCCCTTAAGCACACCCCGGAATACCATCTTCTTCGCCTTCCTTAATGCTCATCTGAGGCATGGATCGGATAATCGGAGGGAAGTATAAGCTAGGTCGGAAGATTGGGAGTGGATCCTTCGGCGAGATCTATCTAGCTACGCACGTTGACTCTTTCGAGATCGTCGCCGTCAAGATCGAAAATAGCAAAACCAAACATCCACAGTTGCTTTATGAAGCCAAACTCTATAACATTCTACAAGGAGGAAGTGGTATACCAAACACAAAATGGTGTGGCTTGGATGGGGAAGACAATGCTCTTGTTCTTGACTTGCTTGGTCCTAGTCTCGAAGATTTGTTTGTCTATTGCGGAAGGAAATTTTTGTTGAAGACAGTTTTAATGTTGGCGGATCAGATGATAACTAGAATAGAGTATGTGCACTCTAAAGGCTTTCTGCATCGGGATATTAAGCCTGATAACTTCCTTATGGGACTTGGTCGAAAGGCAAACCAGGTGTATATAATTGATTTTGGGCTTGCAAAAAGATATAGAGAAGCCACTACTAACCGTCATATACCATACAGAGAAAACAAAAATTTGACTGGGACTGCTCGATATGCAAGTTGCAACACTCATTTGGGCATTGAACAAAGCCGTAGGGATGATTTGGAATCATTGGGTTATGTTTTACTCTATTTTCTACGGGGAAGCCTTCCATGGCAGGGCCTAAAAGCTGCAACAAAGAAGCAGAAGTATGATAAGATATGTGAGAAGAAGCTTTCAACTCCTATTGAAGTTTTGTGCAAATCACATCCTGTGGAATTTGCATCCTACTTTCATTATTGCCACTCTTTAACATTCGACCAGCGGCCAGATTACGGATTTTTGAAGCGTCTTTTTAAGGATTTGTTTACCCGTGAAGGATTTGAGTTCGATTATATTTTTGACTGGACAATTCTAAAATATCAACAAGCCCAAAAATCAAAAGCTCCACCCCCCCTGCCTCGATTTTCTCCTATTTCTGGCGGTGGCGTAAGCTCAAGAGCCACGCCCATGGATGTTGATAAGCGTCAAGTCTCTGGTGCAGGTGATGGCCGTGAAGAAACCACCGAGAGAGTAGGGCCAAGTAATGTGGCGAGGCCAGCGGTTCGAATGCAATTTAAAACTGCGGGGGATAAAAATTTAGCTTCAGACAGTCAGCGCCTCGGCAAGCTGAGAGTGGGCACAGGCACCGACAAGGTTGACACTCTGTCTTCATCTTTCGTTCTTCCAAGCATTTCAAAGAGGGCTGTTGCAGGCTCCAATCCATCGGGCACGCCCGATGCTTCTTCTCACACTGCTCGTAATCTGGGTGGAAATTCCGGCCCCTCCAGCAGCAGCTGGCTTTCCACACTGCAGCGGAACGCCTCAGCCAAATGATATCATTGTGATTTTCTATTAAAAATAATGTGGAAAGAAAGGATTGTACATTTATTCTTATAGTAGTGTTGTTTCAGAGCTGCTACTTCTGCAGTAGTGGCTATGAGGGGAGATGATCCTCTTCTGCATCAATCTTAGCGTTAGAGAATGGTGCTGTGATGGAAGAAAGGTGGAAAGGTAATACAAATAATATGATAGGGTTATCTTTGTGATAAAGTATTAAACAAGGGTTCAGTTTGCAAAAGGGATCATATGAATATGCTGCAGTAGTGTGCTATTTTCTTTATCCGTTTATAAAATCAATACAGCAACTTAAAATCATGCTTATGTAAATAATATCCTATGTTCTATAAAATGTTGAAATATATTTGATACTAGCTTTGAATTTTCAAATAATATTTGAAATTTGTTTAATGAAGATACAGTCAATTAATACTTCAGCACAAAATTGTAATTTTATTGTTAGATTATTCACATTCAGTGTTTAATATAGTCAATATGGCTGGTTTCTAGTTGAGTTTGATTCAAGTTAGGCTCATCATGAGCTTGAAAGTTTTGAGTCTAGCCCAACTCAAAATTGGTTTTGTAATGTCATTTCGAGCTGATTCGATGGGGGGAATTTGTATTATGTCTCCAACTTCACTAAAGCAAAAAATTGATATTTATGGGGTATGCTACAGTGCCCAAAAGGGGACCTAAAGCTTGTCCAGTGTGTTTGGGCAACATAGTAATCCATTGTGTTTATTATAAATCAAGCAGAATTTGCTTTTCTGTATGGAGAATAGAGAAAATTGTAATTGCCCTGTATTCTTTTAATAACAAGGTTTTGGGTTCTCCATCACTGAAAGCTAATTTCGAGTGTGGCAGTAAGCTTGCGGCCGACCATTTTTCAATGCAGAAATTTTG

Network for GWHGAAEX012279

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	9	227	4.20E-26

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CK1_CK1

KEGG pathway

KO	Enzyme	pathway	mapID
K08960	CSNK1E	Wnt signaling pathway	map04310
		Hedgehog signaling pathway	map04340
		Hedgehog signaling pathway - fly	map04341
		Hippo signaling pathway	map04390
		Hippo signaling pathway - fly	map04391
		Hippo signaling pathway - multiple species	map04392
		FoxO signaling pathway	map04068
		Circadian rhythm	map04710
		Circadian rhythm - fly	map04711

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0005524	Molecular Function	ATP binding
GO:0004672	Molecular Function	protein kinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	37.950
SRP064423	SRR2545915	Juvenile tuber	36.070
SRP108465	SRR5643513	five period of Gastrodia elata	46.550
	SRR5643514	five period of Gastrodia elata	45.020
	SRR5643515	five period of Gastrodia elata	58.470
	SRR5643524	five period of Gastrodia elata	53.560
	SRR5643525	five period of Gastrodia elata	81.720
	SRR5643528	five period of Gastrodia elata	95.870
	SRR5643658	five period of Gastrodia elata	86.060
	SRR5643659	five period of Gastrodia elata	51.250
	SRR5643660	five period of Gastrodia elata	55.230
	SRR5643661	five period of Gastrodia elata	52.060
	SRR5643662	five period of Gastrodia elata	59.770
	SRR5643663	five period of Gastrodia elata	49.080
	SRR5643664	five period of Gastrodia elata	51.650
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	47.860
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	50.310
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	46.560
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	48.280
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	54.950
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	66.740
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	52.710
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	52.640
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	42.990
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	47.310
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	51.810
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	51.810
SRP279888	Gastro	Gastrodia elata tuber	54.70
	Juven	Juvenile tuber	49.16
	Mother_Gastro	Mother tuber of Gastrodia elata	91.20
	Mother_Juven	Mother tuber of Juvenile	110.73