Detail information of GWHGAAEX012280/evm.TU.scaffold_42.79
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|556567610|ref|YP_008736035.1| | 2.00E-12 | glycoside hydrolase family protein [Actinoplanes friuliensis DSM 7358] |
| nr | gi|566176725|ref|XP_006381725.1| | 3.27E-136 | hypothetical protein POPTR_0006s16380g [Populus trichocarpa] |
| Swissprot | tr|Q9SVV2|XTH26_ARATH | 4.00E-111 | Probable xyloglucan endotransglucosylase/hydrolase protein 26 (Precursor) |
| trEMBL | tr|U5GDM0|U5GDM0_POPTR | 1.00E-136 | Xyloglucan endotransglucosylase/hydrolase {ECO:0000256|RuleBase:RU361120} |
| TAIR | AT4G28850 | 1.00E-110 | xyloglucan endotransglucosylase/hydrolase 26 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000050 | 1797422 | 1799553 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012280
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00722.20 | Glyco_hydro_16 | 37 | 206 | 1.50E-58 |
| PF06955.11 | XET_C | 237 | 286 | 4.20E-16 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH16 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006073 | Biological Process | cellular glucan metabolic process |
| GO:0010411 | Biological Process | xyloglucan metabolic process |
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0042546 | Biological Process | cell wall biogenesis |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0016762 | Molecular Function | xyloglucan:xyloglucosyl transferase activity |
| GO:0005618 | Cellular Component | cell wall |
| GO:0048046 | Cellular Component | apoplast |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.080 |
| SRR2545915 | Juvenile tuber | 0.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.090 |
| SRR5643514 | five period of Gastrodia elata | 0.000 | |
| SRR5643515 | five period of Gastrodia elata | 0.000 | |
| SRR5643524 | five period of Gastrodia elata | 0.000 | |
| SRR5643525 | five period of Gastrodia elata | 2.210 | |
| SRR5643528 | five period of Gastrodia elata | 0.440 | |
| SRR5643658 | five period of Gastrodia elata | 2.490 | |
| SRR5643659 | five period of Gastrodia elata | 0.070 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.070 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.080 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.060 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.070 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.060 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.12 |
| Juven | Juvenile tuber | 0.02 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.42 | |
| Mother_Juven | Mother tuber of Juvenile | 0.04 |