Detail information of GWHGAAEX012284/evm.TU.scaffold_42.85
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1986 | 0 | Vesicle coat complex COPII, subunit SEC23 |
| nr | gi|743769009|ref|XP_010914784.1| | 0 | PREDICTED: protein transport protein SEC23 [Elaeis guineensis] |
| Swissprot | tr|Q9SFU0|SC24A_ARATH | 1.00E-13 | Protein transport protein Sec24-like At3g07100 |
| trEMBL | tr|M0T8Q1|M0T8Q1_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P20530_001} |
| TAIR | AT4G01810 | 0 | Sec23/Sec24 protein transport family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000050 | 1978940 | 2008917 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012284
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04810.14 | zf-Sec23_Sec24 | 193 | 225 | 1.50E-07 |
| PF04811.14 | Sec23_trunk | 271 | 499 | 3.80E-13 |
| PF08033.11 | Sec23_BS | 517 | 608 | 4.80E-12 |
| PF04815.14 | Sec23_helical | 622 | 718 | 2.30E-11 |
| PF00626.21 | Gelsolin | 744 | 808 | 9.40E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006886 | Biological Process | intracellular protein transport |
| GO:0006888 | Biological Process | ER to Golgi vesicle-mediated transport |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0030127 | Cellular Component | COPII vesicle coat |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 68.100 |
| SRR2545915 | Juvenile tuber | 58.300 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 27.100 |
| SRR5643514 | five period of Gastrodia elata | 24.780 | |
| SRR5643515 | five period of Gastrodia elata | 25.030 | |
| SRR5643524 | five period of Gastrodia elata | 22.760 | |
| SRR5643525 | five period of Gastrodia elata | 26.270 | |
| SRR5643528 | five period of Gastrodia elata | 27.370 | |
| SRR5643658 | five period of Gastrodia elata | 27.490 | |
| SRR5643659 | five period of Gastrodia elata | 30.890 | |
| SRR5643660 | five period of Gastrodia elata | 36.800 | |
| SRR5643661 | five period of Gastrodia elata | 31.120 | |
| SRR5643662 | five period of Gastrodia elata | 35.170 | |
| SRR5643663 | five period of Gastrodia elata | 31.070 | |
| SRR5643664 | five period of Gastrodia elata | 34.610 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 38.730 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 37.670 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 39.060 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 45.810 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 45.290 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 54.890 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 44.580 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 47.630 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 34.060 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 39.540 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 33.500 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 33.500 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 46.99 |
| Juven | Juvenile tuber | 28.23 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 26.88 | |
| Mother_Juven | Mother tuber of Juvenile | 29.53 |