Detail information of GWHGAAEX012285/evm.TU.scaffold_42.87
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|219848715|ref|YP_002463148.1| | 3.00E-10 | NB-ARC domain-containing protein [Chloroflexus aggregans DSM 9485] |
| nr | gi|743771151|ref|XP_010915863.1| | 0 | PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 [Elaeis guineensis] |
| Swissprot | tr|C6L7U1|LIN1_LOTJA | 0 | Putative E3 ubiquitin-protein ligase LIN-1 {ECO:0000250|UniProtKB:D1FP53} |
| trEMBL | tr|M0RKE3|M0RKE3_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P22180_001} |
| TAIR | AT3G06880 | 1.00E-45 | Transducin/WD40 repeat-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000050 | 2029888 | 2049840 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012285
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04564.14 | U-box | 370 | 440 | 1.30E-15 |
| PF00400.31 | WD40 | 1064 | 1098 | 0.00017 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | U-box |
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016567 | Biological Process | protein ubiquitination |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004842 | Molecular Function | ubiquitin-protein transferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.440 |
| SRR2545915 | Juvenile tuber | 3.810 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.520 |
| SRR5643514 | five period of Gastrodia elata | 6.210 | |
| SRR5643515 | five period of Gastrodia elata | 4.930 | |
| SRR5643524 | five period of Gastrodia elata | 5.610 | |
| SRR5643525 | five period of Gastrodia elata | 7.580 | |
| SRR5643528 | five period of Gastrodia elata | 15.980 | |
| SRR5643658 | five period of Gastrodia elata | 11.840 | |
| SRR5643659 | five period of Gastrodia elata | 1.410 | |
| SRR5643660 | five period of Gastrodia elata | 1.720 | |
| SRR5643661 | five period of Gastrodia elata | 1.420 | |
| SRR5643662 | five period of Gastrodia elata | 1.340 | |
| SRR5643663 | five period of Gastrodia elata | 1.020 | |
| SRR5643664 | five period of Gastrodia elata | 1.970 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.510 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.020 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.230 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.040 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.930 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.570 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.350 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.590 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.750 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.160 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 12.950 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 12.950 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.38 |
| Juven | Juvenile tuber | 6.05 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 12.14 | |
| Mother_Juven | Mother tuber of Juvenile | 17.51 |