Detail information of GWHGAAEX012287/evm.TU.scaffold_42.89


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|557694902|ref|YP_008797956.1|3.00E-13ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum]
KOGKOG04179.00E-110Ubiquitin-protein ligase
nrgi|212274519|ref|NP_001130714.1|4.17E-114uncharacterized protein LOC100191818 [Zea mays]
Swissprottr|Q8LGF7|PEX4_ARATH3.00E-110Protein PEROXIN-4
trEMBLtr|B6T659|B6T659_MAIZE2.00E-114Uncharacterized protein {ECO:0000313|EMBL:ACN36668.1}
TAIRAT5G257609.00E-110peroxin4

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005020777912094047-
Transcript Sequence

Network for GWHGAAEX012287

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00179.25UQ_con71473.20E-46
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUBC

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms72.830
SRR2545915Juvenile tuber96.990
SRP108465SRR5643513five period of Gastrodia elata100.290
SRR5643514five period of Gastrodia elata99.340
SRR5643515five period of Gastrodia elata105.920
SRR5643524five period of Gastrodia elata106.590
SRR5643525five period of Gastrodia elata157.820
SRR5643528five period of Gastrodia elata169.690
SRR5643658five period of Gastrodia elata220.260
SRR5643659five period of Gastrodia elata99.060
SRR5643660five period of Gastrodia elata101.690
SRR5643661five period of Gastrodia elata106.910
SRR5643662five period of Gastrodia elata106.340
SRR5643663five period of Gastrodia elata116.860
SRR5643664five period of Gastrodia elata103.990
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_165.180
SRR6049655Rhizomagastrodiae_C368-T10_good_190.870
SRR6049656Rhizomagastrodiae_C368-T07_good_170.560
SRR6049657Rhizomagastrodiae_C368-T07_good_173.280
SRR6049658Rhizomagastrodiae_C368-T04_good_168.830
SRR6049659Rhizomagastrodiae_C368-T04_good_174.580
SRR6049660Rhizomagastrodiae_C368-T01_good_167.770
SRR6049661Rhizomagastrodiae_C368-T04_good_165.650
SRR6049662Rhizomagastrodiae_C368-T01_good_162.490
SRR6049663Rhizomagastrodiae_C368-T01_good_165.670
SRR6049664Rhizomagastrodiae_C368-T10_good_186.610
SRR6049665Rhizomagastrodiae_C368-T10_good_186.610
SRP279888GastroGastrodia elata tuber 156.45
JuvenJuvenile tuber113.26
Mother_GastroMother tuber of Gastrodia elata 140.95
Mother_JuvenMother tuber of Juvenile 106.16