Gene detail

Detail information of GWHGAAEX012289/evm.TU.scaffold_42.93

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|116750628\|ref\|YP_847315.1\|	1.00E-52	class IV aminotransferase [Syntrophobacter fumaroxidans MPOB]
KOG	KOG0975	4.00E-120	Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily
nr	gi\|743771097\|ref\|XP_010915835.1\|	3.57E-150	PREDICTED: D-amino-acid transaminase, chloroplastic-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q8L493\|DAAA_ARATH	8.00E-123	D-amino-acid transaminase, chloroplastic {ECO:0000303\|PubMed:18318836} (Precursor)
trEMBL	tr\|D7SUD3\|D7SUD3_VITVI	4.00E-147	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI20882.3}
TAIR	AT5G57850	4.00E-120	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000050	2194878	2200106	-

Transcript Sequence
>GWHTAAEX012289 TACAACAAAGATAAAAGCTAAGTTGAATAATCTTTAATTTCTAAACTTCAGATTCATCTGCGTGTTTAAGTGGATGAGAAAATCACAGATTTTGGTAATATTAAGTCCTATTATTTTTCTCTTTAAATTAGACGGTATTTTTGCGATATTCTATAAGCTCAAAAGCATCGAATGTGTAAATAAAAAAGAGTTCGATAACACATATGAAATTCCGCGTGCATAAATTAAAGCGCATACATCATGAGTCTAAAGCGGTGACAAAAAGATCATTATATTAAGAGCGTCTGCTCTGTTCGCTACCATTCCACTCCAGATCTCCATCGCCATGGTTTCTCTCCCGGCCCCGGTCCAACCGCTCGCCTTCAATAAGCAGTCGTCGTATCGTCCGCTTCGGTTCGCTCTGCGCAGCTTTTCGGTCGGTCCGGTTCGCTCTGCCCAGCGGTTCGGCCGGTCACGGAGTTCCGATACAGCCGCCGAGCATGTAAATGCCGATGCCAATGATTTTGATGTTCCTCTTCTCTCCGGTACTCAGGTAGCTGAGCAACTGAGAGCATTCGAGCAAAAAAGACTGAGGAAGCCGAGCAAAGCGGCGATGTACTCGAGCATCTTCGGAGGAATCACGACAGAGCTTGCGTCCATGGTGGTTCCTTTGGACGACCACATGGTTCACAGAGGCCACGGTGTCTTTGACACAGCTGCTATAATGGACGGATATATGTACGAGCTAGATCAGCACTTGGATCGGCTTCTGCGGTCGGCTTCGATGGCCAAGATCGCCCCGCCGTTCGATCGGGCTCGAATAAGAGGCATTCTGATGAAAACGGCGGCCGCGTCGAGGTGCACAGAAGGGGCTTTGAGGTATTGGATATCTGCAGGTCCCGGCGACTTCTACCTTTCCCCGGCCGGCTGCTTGCAGTCTGCTCTGTACGCGGTGGCCTACGAGACGCATCTGCCCGAGCTCAAGGGCGCCAGAGCGGTGACTTCTTCAATCCCTATGAAATCGCCTCAATTTGCGGTCATGAAGAGCGTGAATTATCTGCCCAACGCGCTGTCCAAGATGGAGGCCGAAGAGAGCGGTGCATTTGCCGGAATTTGGGTCGACGGCGAGGGATGCGTTGCCGAGGGGCCGAACATGAATGTCGCCTTTCTGATGCGGTCGGGGGATCTGGTAATGCCCGAATTTGATGCGATTCTCAGCGGCTGCACTGCTGGAAGAGTCCGCGTTCTTGCGGAGAGGCTCGTGAGGGAGGGGAAGATCCGAGGGGTTCGAGTTGGGAAGGTCACTTCTGAGGAAGGGAAGATGGCGCAGGAGATGATGCTCATTGGAAGCGGGATTCTTGTCAAGCCGGTCCTCCAATGGGATGATCAAATCATTGGTGATGGTATGCTGCTTTTTCTTGTTTGTTATTGTTCCTTAATAATTCGTGTTTATAAGTATACAAGGTTTGGGGAAATTGTGATGGAGTCTATGAAATTGGTAAAAATAGGCCTCACCTTGTTCTCTAACTTTGGGAGGATTTGAGAATGGATTAGGGAACATATATGATTGCCCTATCTTATAGTAATATGCAGATAAAGGCTGTCATCCAACGGGATGGTCAAATCATTGGTGATGGTTTGTTGCTATTTTGCAAAAAAGATTAGTGCTTTTTAAGTTCAATGAAGAATAGCTCTTGTTTGTTCTCTCTATATATTATGCTTCCTTAATATCGTTTTCAAAATATAAAAAGTTTGGGGAACTTGTGTTGGAGCCCATAAAATTGATTATAATAGGCCTTACCATGTTCTTTGGAAGGATTTGGGGATGGATTAGGGAATGTGCAGCATTGTCCTGTTCTATAATAATGTGCAGATAATAGCTGTCCTCCAATGGGATGGCCAAGTCATTGCAAAAGATTAGTGCTTTTTAAGCCTGAGGCAGAGCTCTTGTTTGTTTGTTTGTTTGTTTTTCCTTGGAAAAACTAGCTTCTAATTGTATAAAGTTTAAGGAGCATGTGCTTGAGCCCTTGGAATTGATTAAAATAGGCTTCACCTTGTTTGGATTGGGAATGCATATCATTTCCCTATCCCATAATAATGTGCACATAGTAGTTGTTTAGTTGAACAAAACATGCAGCATTGACTTTTTCCTTACAGCTACAAGAACTGAAAATTGACATGATCTGCTGAAAATGTAGCATATCTGTAGTTTGCATTTATTGTAATGATAATCAATCAGGCATTCTTGCAGGGAAGGAAGGTCCTGTTTCAGAAGCTCTGTTTAATCGCATCGTGGAAGACATGAAAAGTGGCCCTCCTCTTGTTCGAGTCCCAGTGCCCTACTGAAATTTTCTTGTTTGATCTGAAGCTTCGATTTCGTTGCATCTTGTTGTTTGTTTAGAGATGCAGTTAATACATGCACATATATGTTTATAAATGAAGTATTGTTTTATTTGTAGCATAATGCATTTGTGCAGCTATAATTGGAACTTGTATTGATTTATGTATATAAAATTTGGTTATGAATTAGTTCGTCTTGGGTTTTCAAAAGTTAATTGAATTTTGTCAATTATTTGGCCCATGAATATTTATGTATGAATTGCTATTTGAAT

Network for GWHGAAEX012289

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01063.18	Aminotran_4	119	344	1.40E-37

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18482	ADCL	Folate biosynthesis	map00790

Gene Ontology

GO term	Ontology	Name
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.420
SRP064423	SRR2545915	Juvenile tuber	2.890
SRP108465	SRR5643513	five period of Gastrodia elata	8.990
	SRR5643514	five period of Gastrodia elata	18.110
	SRR5643515	five period of Gastrodia elata	11.990
	SRR5643524	five period of Gastrodia elata	16.810
	SRR5643525	five period of Gastrodia elata	4.400
	SRR5643528	five period of Gastrodia elata	3.750
	SRR5643658	five period of Gastrodia elata	7.110
	SRR5643659	five period of Gastrodia elata	6.520
	SRR5643660	five period of Gastrodia elata	5.870
	SRR5643661	five period of Gastrodia elata	7.410
	SRR5643662	five period of Gastrodia elata	8.350
	SRR5643663	five period of Gastrodia elata	10.280
	SRR5643664	five period of Gastrodia elata	8.700
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.930
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.770
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	9.150
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.930
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.400
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	9.200
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.870
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.460
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.830
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.330
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	9.980
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	9.980
SRP279888	Gastro	Gastrodia elata tuber	12.23
	Juven	Juvenile tuber	5.97
	Mother_Gastro	Mother tuber of Gastrodia elata	3.83
	Mother_Juven	Mother tuber of Juvenile	3.34