Gene detail

Detail information of GWHGAAEX012293/evm.TU.scaffold_42.97

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|320355268\|ref\|YP_004196607.1\|	1.00E-90	ketopantoate hydroxymethyltransferase [Desulfobulbus propionicus DSM 2032]
KOG	KOG2949	0	Ketopantoate hydroxymethyltransferase
nr	gi\|727449965\|ref\|XP_010506611.1\|	0	PREDICTED: 3-methyl-2-oxobutanoate hydroxymethyltransferase 1, mitochondrial-like [Camelina sativa]
Swissprot	tr\|O82357\|PANB1_ARATH	0	3-methyl-2-oxobutanoate hydroxymethyltransferase 1, mitochondrial (Precursor)
trEMBL	tr\|A0A078IS78\|A0A078IS78_BRANA	0	BnaA07g38230D protein {ECO:0000313\|EMBL:CDY53915.1}
TAIR	AT2G46110	0	ketopantoate hydroxymethyltransferase 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000050	2249707	2252571	+

Transcript Sequence
>GWHTAAEX012293 TGATGACCGAAAACCTTGGAAAATTTGCAACTTTAGACCTCGTATTAAATAAATTAAATATTACTGTTTTAATTTCTAGCGTTTATAATTTCTTTCCTCATATAAGAATTATTGGCAAAATTTCTAATATTTGAATACAAGTCCCAAAAATGTATTTGCACTTAAAAATGATTTAATTATAAAGTGTTTGGTTTAATGTTTTATGTATATTATGCAATTTATAAGGATTTTTAAATAATGGAACTTCATTTCAAATCACATTGAAACAAAAGTCCCACATCGTAAAACTTGATTTGAGCTTTGAATCAGGAAAGAGAATCATGATAAGTACAACATTTTCTTCTCTGAGCTGCTGCAGCCAAAATGATGCTGAGGCTGGGCCGCAGGTTTCTGAGCAACATTCCAGAGAATGCGGTCTACGGCGGGCCGAAAACGCAGAACGGAGAGGGGAAGCGCGTGACGTTGAATCATCTCCGGCAGAAATACGGCAGGGGCGAACCGATTACCGTCGTTACAGCCTACGACTATCCCTCCGCTGTTCACGTCGATCTCGCCGGAATCGACGCATGCCTCGTCGGCGATTCCGCTTCCATGGTCGTTCACGGCCACGACACAACCCTTCCCATCTCCCTCGACCAGATGCTCGCCCACTGCCGAGCCGTCGCTCGGGGCGCCTCCCGGCCTCTCCTCATCAGCGATTTGCCCTTCGGATCCTACGAATCCTCTACCTCCCAGGCGGTGGATGCGGCTGTTAGGGTTTTGAAAGAAGGGGGAATGGATGCAGTCAAATTGGAGGGAGGATCTCCGTCGAGGATATCGGCTGTTAGGGCGATTGTGGAGGCAGGGATTGCGGTTATGGGGCATGTTGGATTGACCCCTCAGGCAATCAGCGTTCTGGGCGGATTCAGGCCTCAGGGGAAGACCGTTTCCAGTGCTATCAAGGTGGTTGAAACTGCGATGGCCCTGCAGGAGGCCGGCTGCTTCTCTGTTGTGCTGGAGTGCATTCCTGCGCCTGTGGCTGCTGCTGCTACTTCTGCATTACAAATCCCTACTATTGGCATTGGAGCAGGCCCTTGCTGCAGTGGCCAGGTGCTGGTTTACCATGATTTGTTGGGCATGCTGCAGCACCCTCACCATGCAAAGGTCACGCCAAAATTCTCCAAGCAGTACGGCCGCGTAGGGGATGCCATCAACAAAGCACTCTCGGAGTTCAGGCAAGAAGTTGAGGGTCGAGTATTTCCAGGCCCGTCGCATACTCCATACAAAATGGGTGCGGACGATATCGACGGCTTTCTGAAAGAGCTGGAGAAATCAGGCTTGAGGGAGGCTGCCGCTTCTGCAGCTAATGCAGCCGCCTAGAACTCGCAAACGACGAGGAAAGTGTCATCCTCTCGCTGAGTTTAGTTAGGGTTTAGTATATTAACATTTTTTGAATCCTTACTATTTTTATTTTCAACAGAATTTATGAGTTCTGCTACTAATCAATAATATGGTGCTTCAGGCCAATTATAATTGGTGATAAGCGATAAAAAGGTTTTGATGCAGCACTCTTTGTGATCTCTTTAAATATGTTTCTTTTATTTTTATGAAAACTGGTGAGAGCTGAGCCCGAAATATTATTAGAAATAGAC

Network for GWHGAAEX012293

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02548.14	Pantoate_transf	31	294	8.40E-107

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00606	panB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Pantothenate and CoA biosynthesis	map00770

Gene Ontology

GO term	Ontology	Name
GO:0015940	Biological Process	pantothenate biosynthetic process
GO:0003824	Molecular Function	catalytic activity
GO:0003864	Molecular Function	3-methyl-2-oxobutanoate hydroxymethyltransferase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	23.800
SRP064423	SRR2545915	Juvenile tuber	24.770
SRP108465	SRR5643513	five period of Gastrodia elata	62.330
	SRR5643514	five period of Gastrodia elata	82.220
	SRR5643515	five period of Gastrodia elata	62.980
	SRR5643524	five period of Gastrodia elata	73.110
	SRR5643525	five period of Gastrodia elata	63.550
	SRR5643528	five period of Gastrodia elata	59.840
	SRR5643658	five period of Gastrodia elata	46.070
	SRR5643659	five period of Gastrodia elata	66.700
	SRR5643660	five period of Gastrodia elata	90.610
	SRR5643661	five period of Gastrodia elata	79.360
	SRR5643662	five period of Gastrodia elata	75.660
	SRR5643663	five period of Gastrodia elata	78.380
	SRR5643664	five period of Gastrodia elata	92.100
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	54.990
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	53.730
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	60.910
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	52.870
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	56.130
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	50.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	56.860
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	50.190
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	71.700
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	71.440
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	64.890
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	64.890
SRP279888	Gastro	Gastrodia elata tuber	96.75
	Juven	Juvenile tuber	86.79
	Mother_Gastro	Mother tuber of Gastrodia elata	101.10
	Mother_Juven	Mother tuber of Juvenile	80.17