Gene detail

Detail information of GWHGAAEX012295/evm.TU.scaffold_42.99

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|435849690\|ref\|YP_007301631.1\|	2.00E-61	superfamily II helicase [Methanomethylovorans hollandica DSM 15978]
KOG	KOG0950	0	DNA polymerase theta/eta, DEAD-box superfamily
nr	gi\|743771019\|ref\|XP_010915798.1\|	0	PREDICTED: LOW QUALITY PROTEIN: helicase and polymerase-containing protein TEBICHI [Elaeis guineensis]
Swissprot	tr\|Q588V7\|TEB_ARATH	0	Helicase and polymerase-containing protein TEBICHI
trEMBL	tr\|A0A067GWC2\|A0A067GWC2_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO79702.1}
TAIR	AT4G32700	0	helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000050	2424196	2482007	+

Transcript Sequence
>GWHTAAEX012295 CTTATTTCCACTTTCTGCGATTGCACAGGCGGAGGCTATGACCCTCTTTGGATACAAAATCGAATTGGCGCGGCCTCGTTTGTTCAAAAGAGCGGCAGGCCTCGCGCAACACCTCAGATTCTGAAAATTTCATGCAAGGCCTTCTTCATCAGTCACCACGGAACCATCATCATCATCGTCTTCCTTCTGAGTGTTGGCCTGCGGCCATCGTCTTCTACAATGTCCTCCGGTTCTCCTCGAACCCGAATCAATCAGTTCTTCGCTTCTAAGAAGAAAAAATCCGATAAAGATCTCAAAACCTCGTTATCCGGCTCACCCAAGGGAAGTCTTGCTGGGTATTTAGTGAAATCTCCCGATGCAAGCAGTCAGTCGCCCTCCAAAGATACTTCTTCTCGCACCGGTCCGGTCAGGAGGAATTTGACGTTGGAGATTGGGTTGGAATCTGAAATCGCGAAGAAACCTTCCTCGCCATTGCCGGAGTCTACAGGGCACTCGAGGAGCGATGATGGCCCATCTAAAGCTCAGAAAGGAGCTATTTTTGAAGATAAGGTTCCCATGGAGTCTATCAATGTGGAAATTCATTCGAAGGAGGAAGGGGGTTCAGAAGTTGGTGGAGGTAATTTGGAGCTTAAAAAGTTTGCAAATGATTTCCTCTCTTTGTATTGCAGTGATCTTCCACAAGCTTTACCTGAGAATCAAGAGACTAGAAGTAAAAAAAGAGATGGCAGTCCATTTTTGTTATCCACTTGCAGCAAAAAGCACTGCATCATAGATCGTGGCAATAGGACGCCAGACAAAAATAACAGTTCTTCTGAAAAAAGCTGTTATGAGACTGAATCGCTAAGTAATGATTACAAAGAAATTAACAAGGCTGGTGCTTCTTGTGTCAACTTAAAAGAATGCAGCGAAACACCTGATTTAAAATCAATAAAGTGTGGGATTAAGTCACTTGGTTCATCTGTTGAAGCATCTAAATCTTCTTCTAGAAGTTCCAAGTTCTCACCAGGAGAAGAATTTTGGAACGAGGCCATTCAAGTTGCCGATGGTTTAATTGATCCAGTTGAAAGTGTACCTGAAAGCTCTCTAGTTCTAATAAAGCAGAGGTCACATAATACATTTTTGAAGGATGCTTCATCTTGTGTTGCTACTCAAAATTTTGAATATCTTTCAAAGGTAGATATTGGAAAGTCTGACAGCCAAAATGTTGTACAGATTATCAAGCCTAAAGAGACGACCACTTCAGAAATTAAAATGCTTTCTGATTTGGTTCAGCAAAATGAAGTGTCACCTTTGCCAATAAGGCATTTTGATTTTATTAATGAAGACAATAAAACTGACAAGAATTCTTGTCTGATCTCTTTGAAGAGCGTTAATTCTGTGACCAATGCAGGAGTTTGGTTCATGGATAGGGATTTAGTTAACGGTCAAATTTTGCATCATAATAACTGTGGAATTGAGACATACATTAAAGTTTTTGATCAAAAGCAGAACATACATCCTTTGAAAGGAAATTTGCATCAGCCTGTTCTTGACACATCAAGTTCAATTGGAAATGAAGGGAAAACTATTGGTTTGGATCAGGTTAATGCTACTAATCAATCATATATTGGTTTCACCACCCTTCCTCCAATTTCTGCTTCACATGAAATAACAGACGCTGAAGTATTATTGGACAGCAGGTCAAATGCTCAAGTACATAATAAAGAAACTGATACACCAGCTAGTTCCGCCCCTTTGACTGATCGCTTGCAGCTTAGCAATTGGCTTCCGTCTGAACTTGTTCGTGTTTATTACAAGAAAGGCATTGCAAAACTCTATCCTTGGCAGGTTGATTGCCTTCATGTAGCTGGTGTTCTGGATAGAAGAAATCTTGTGTACTGTGCATCCACAAGCGCAGGTAAAAGTTTTGTTGCTGAAATTTTGATGTTAAGGCGAGTTATAGCAACAGGAAATATGGCACTTGTTGTCCTTCCTTATGTATCAATTTGTGCTGAAAAGGCTGAACATTTGGAGTTATTGCTTGAACCACTTGGAAAACATGTGCGAAGCTTCTATGGAAATCAAGGTGGTGGTTCACTTCCCAAAGATACATCAGTAGCCGTCTGCACAATCGAGAAAGCCAATTCGTTGATTAATAGGTTGTTAGAAGAGGGGCGTCTTTCTGAAGTGGGAATAATTGTGATTGATGAGCTTCATATGGTTGGTGACCAACATAGAGGATATCTTTTGGAGCTAATGTTGACTAAGCTACGTTATGCTGCTGGAGAAGGGATTTCAGAATCATCTAGTGAAGAGGCTTCAACCTCCAGCAGTGGAAAAACAGATGCTGCATGTGGTCTGCAAATTGTTGGAATGAGTGCCACAATGCCAAATCTTTCAGCTGTAGCTGATTGGCTTCAAGCTGCACTATATCAGACCGATTTTAGGCCAGTACCGCTAGAAGAATTCATTAAAGTTGGAAACACTATTTATAATAAAAAGATGGATATTATTCGTGTTTTACCAAAAACAGCTGATCTTTGTGGCAAGGACCCGGATCATATTGTGGAACTTTGCAATGAGGTTGTTCAAGATGGTCACTCAGTGCTATTATTTTGCTCTAGCCGAAAAGGTTGCGAAACAACTGCTCGACACATCTCTAAGTTCTTAAAAGGCTATTCCCAATTAATGCGTGGGGTTGATTGTGAGTTCAATAATTATCAATTTGCTATTGAAGCTTTACGAAGATGTCCCTCAGGGTTGGACCCCATTTTTGAAGAAACATTACCTTCTGGTGTAGCATATCATCATGCTGGTTTAACGGTTGAGGAAAGGAACATAATTGAAACATGTTATCGCAAAGGAATTGTACGTGTTTTGACAGCTACATCAACATTAGCTGCTGGAGTTAATTTACCTGCTAGGCGGGTCATATTCAGACAGCCCAAGATTGGTCGTGATTTTATTGATGGAACTCGTTATCGACAAATGGCTGGTCGTGCTGGTCGAACAGGAATAGACACTCGAGGAGAGAGCATACTTATATGCAAGTATGATGAAACTAAAAAGGTTGCTGCCATTCTCAATGATAGTTGTCCCCCTTTGCAATCTTGCCTTTCTGAAGACAAAAACGGTATGACTCATGCAATCGTTGAGGTGGTCGCAGGGGGCATTGTCCAATCAGCAAGTGACATTCATCGTTATGTCAGATGTACTCTTCTTAATTCCACTAAACCTTTTGAAGATGTTGTCACATCAGCTCAAGATTCTCTTAAATGGTTATGCCATAAGAAATTTCTTGAATGGAATGAAGAAACTGGATTGTACTGTTCTACACCTCTTGGTCGTGCTTCCTTTGGAAGTTCTCTCAGCCCTGAAGAATCACTGGTTGTTCTGAATGATCTTTCGAGAGCAAGGGAAGGATTTGTTCTTGCATCTGATTTACATTTGGTTTATTTGGTGACACCTATAAATGTTGAGGTGGAACCTGACTGGGAGCTGTACTATCAGAGATTTATGGAATTACCACCCCTAGATCAGTCTGTTGGAAACCGAGTGGGAGTTGTGGAACCTTTCTTGATGCGCATGGCTCATGGCACTCTGATGCCTGTTCAAGATCAATTGAAAGGAAAATTTTTTTTTCCAAAGGACAATTTGAATAGGAGGAGTGCAAGCAAAGACAGTGATATACATTCAAATGAACAAACTCTTCGAATTGCTAGACGTTTCTATGTTGCACTTATGCTCTCAAGGCTTGTGCAGGAAGTCTCTGTTGCAGATGTTTGTGAAGCCTTTAAAGTTCCCAGGGGAATGATTCAGGCATTACAAGAAAATGCTGGAAGATTTGCTTCAATGGTATCCTTGTTTTGTGAGAGATTAGGATGGCATGATTTGGAAGGTCTTGTTGCCAAATTTCAGAATAGAGTCTCATTTGGTGTTAGAGCAGAAATTGTGGAACTCACTACCATTCCGTATGTGAAGGGGCCACGTGCAAGGGCACTTTTCAAAGCTGGTTTGCGCTCTCCCCTTGCTGTCGCCGAAGCATCTATTTCTGATATTGCTAAAGCAGTTTTTGATTCTTCTGTTTGGTCTGCGCAAGAAGGCTTAGCCAAGAAACGTATACACATGGGTGTTGCCAAGAAGATAAAAAATGCTTCTCGTAAAATTGTCCTTGATAAAGCAGAAGAAGCAAGAGTTGCTGCGTTTTCTACTTTCAAATCCCTTGGAATTAATATTCCTCAGCTTTCTCATCCCATGCTCACTAACATTGCTGATAATTCTTTTCAACATGGTAGTAACACTTCTTCAAAGTTTCTTGAATCACCTTTTGACAACTCAGCTTCAGAGGACACAAAGGCTTCCAATCATCCAGCTGTAGAAAGCAAACCTATGGTCTTGGATAGCAGGTCTGAAGAAACTATAGCACACAATCTTAACATGAATACTGATGCCACAATTGTAACAACAGGAGCTGCAAAGTTTGCTGGAGAAGTGAAACATGCTTGCTATGCCTCTACTTCTGATTTAATAGATACAGATTTTACAAAGTACAAGTATTCTGATCAGTTACTTGGCAATCTTGTTAAACCAATGGCTGCATCAACTTCCACACTAGAACCTGCTAATGAAGCTTGTATCGTGAAGCATGAGCCTGATAAAAAAGGAGTTATGGAAGAGCCATTGGCTAGTCATACCAGCAAAAGCAACTTTGACAAAGGTCCCTCTTGTGCAAGTACATTTCCTGGTGGTTTTGATTCTTTCTTAGAGCAATGGGATCATAAACAGGAGTTCTATTTTGATCTTCATTACTCAAAATTGCCAGATCAAAATTCTTCTTTATTTTTTGAAGTTTTTGGCCTTGCTATTTGTTGGGAAAACTCACCTGTATACTATGTCAATTTTTTGAGGGATCTTTTACCATCTGGGGAAGATAGCAGCTTTCTTGGTCAATTAAGCAATCCAAATGGTGATATTACCAAAGGTCTAGCAGATTTTGACAGGTGGACGTCTACAAAGAGTAGGTGGAAAAAGTTAGGTAAGATAATGAGCCAAAATGGTGCTCGCAAGGTCTGTTGGAACTTGAAAACTCAGATCCAGGTACTAAAAGGTCCGTGTATCTCACTTCAGAGATTCAGCAGGCTTGGATTTGAGCAAAATATATTGAAGGACACTGAGCTTATTGGTAGTTCATATATTATGCTGCCAACTATCTTTATTCTTGATGGATTCGATTTATGTTTAATGACGTGGCTCCTTTGGCCTGATGAAGAGAGCAAGTCCACTCCCAGCCTTGAGAAGTTGGTTAAGAAGCGGCTATCCAGCCAGGCTGCAGCCACTGCTAGCCGGGATGGCAGGTGGAGAAATCAAATGCGTAAAGCTGCTCATGATGGTTGCTGTAGGCGTGTTGCACAAACACGAGTTTTAAGTTCTGTCATTTGGAAACTCCTTGTTTCTGAAAACCTTGTTAACGCTCTCACCAGAGTTGAGAACCCCCTGGTTAATGCCCTGGCAGACATGGAGATTTGGGGTGTAGGTGTTGACATGGAAGCATGCCTCAGAGCAAGACATTATTTATTGAGAAAACTTAAGGAACTTGAGAATGACGCACACAATCATGCTGGCATGCAGTTTTCTCTTTTCTCAACTGCAGACATTGCCCATGTACTTTATACTCGCTTAAATTTACCAGTACCTAATAGCAGCAAGAGTGGAAAGCTTCATCCTAGCACAAACAAACATTCCTTGGATCTATTAAGGGGACAACATCCCATCATTTCCATTATTAAAGAGCACAGGACACTAGCAAAGCTATTAAATAGTACGTTGGGATCAATTTGTTCCCGGGCTCGCTTGTGCATTAATTCCCAAAGGTATATAGTACGTGGACGTTGGCTTCAAACTTCAACAGCTACTGGGAGGCTTTCAATGGAGGAACCAAATCTTCAATGTGTTGAACATATGGTGAATTTCACAACCAATTATCCGAATACGAAAAAGTTAAGCTCATTGGGTATTATTGATCAACATCAGATAAATCCTCGTGATTTTGTCATTTCGACTCAAGAGAACTGGTTATTGCTCACTGCTGATTATTCTCAAATAGAGCTACGACTAATGGCTCATTTCTCAAAAGATACTTCACTTACTGAATTGCTAAGAAAGCCTGATGGTGATTGTTTCACCATGATAGCAGCAAGATGGACTGGTAAGCTGGAGTCTGCTATTAGCTCCAAGGAGAGAGAACAGACAAAAAGATTAGTTTATGGTATCTTGTATGGAATGGGTTCAAACACCCTTGCAGAACAACTAGACTGTAACTCAAAGGAGGCTTTACAAAAAATACAAACCTTCAAAGCTTCCTTCCCTGGCGTTTCTGCCTGGTTGAATGAAGCAGTTTCTTCCTGCTGCGATAGAGGATATGTTGAAACCATAATGGGAAGAAAGCGATTTCTGTCAAAAATAAATTTTGGAAACAACAAAGAAAAGGCTAAAGCTCAAAGACAGGCTGTTAATTCCATATGCCAGGGCTCTGCTGCTGATGTTATCAAGATTGCAATGATAAAAATCCATAAAATAATTGTTGATGGTGATGACAAGCCTAATTCAGACATTACATCTGAGATGCAGTTCTCCTCTCTGAGAGGTCAATGCAGAATTATTTTACAGGTGCATGATGAACTAGTGCTGGAAGTTGACCCTCGTTTTGTGAGGGAGGCGGCGAGACTGCTTCAAACAAGCATGGAGGGTGCTGCTTCACTTTCAGGCATAATATCGGACTATGTTAAGATTCCTCATACTAGATTTTTGTCAGCAGTGCATCTTGAGTGCGTTTCTCTTTTATCTGTCACAGTTCCTTTACGAGTTCAAATGAAGATTGGGAGAACATGGGGAACGCAGGAGCCTTTCTCCCAATGA

Network for GWHGAAEX012295

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.28	DEAD	545	717	8.80E-15
PF00271.30	Helicase_C	776	925	7.90E-08
PF00476.19	DNA_pol_A	1773	2217	7.90E-109

Protein Sequence

>GWHPAAEX012295
MSSGSPRTRINQFFASKKKKSDKDLKTSLSGSPKGSLAGYLVKSPDASSQSPSKDTSSRTGPVRRNLTLEIGLESEIAKKPSSPLPESTGHSRSDDGPSKAQKGAIFEDKVPMESINVEIHSKEEGGSEVGGGNLELKKFANDFLSLYCSDLPQALPENQETRSKKRDGSPFLLSTCSKKHCIIDRGNRTPDKNNSSSEKSCYETESLSNDYKEINKAGASCVNLKECSETPDLKSIKCGIKSLGSSVEASKSSSRSSKFSPGEEFWNEAIQVADGLIDPVESVPESSLVLIKQRSHNTFLKDASSCVATQNFEYLSKVDIGKSDSQNVVQIIKPKETTTSEIKMLSDLVQQNEVSPLPIRHFDFINEDNKTDKNSCLISLKSVNSVTNAGVWFMDRDLVNGQILHHNNCGIETYIKVFDQKQNIHPLKGNLHQPVLDTSSSIGNEGKTIGLDQVNATNQSYIGFTTLPPISASHEITDAEVLLDSRSNAQVHNKETDTPASSAPLTDRLQLSNWLPSELVRVYYKKGIAKLYPWQVDCLHVAGVLDRRNLVYCASTSAGKSFVAEILMLRRVIATGNMALVVLPYVSICAEKAEHLELLLEPLGKHVRSFYGNQGGGSLPKDTSVAVCTIEKANSLINRLLEEGRLSEVGIIVIDELHMVGDQHRGYLLELMLTKLRYAAGEGISESSSEEASTSSSGKTDAACGLQIVGMSATMPNLSAVADWLQAALYQTDFRPVPLEEFIKVGNTIYNKKMDIIRVLPKTADLCGKDPDHIVELCNEVVQDGHSVLLFCSSRKGCETTARHISKFLKGYSQLMRGVDCEFNNYQFAIEALRRCPSGLDPIFEETLPSGVAYHHAGLTVEERNIIETCYRKGIVRVLTATSTLAAGVNLPARRVIFRQPKIGRDFIDGTRYRQMAGRAGRTGIDTRGESILICKYDETKKVAAILNDSCPPLQSCLSEDKNGMTHAIVEVVAGGIVQSASDIHRYVRCTLLNSTKPFEDVVTSAQDSLKWLCHKKFLEWNEETGLYCSTPLGRASFGSSLSPEESLVVLNDLSRAREGFVLASDLHLVYLVTPINVEVEPDWELYYQRFMELPPLDQSVGNRVGVVEPFLMRMAHGTLMPVQDQLKGKFFFPKDNLNRRSASKDSDIHSNEQTLRIARRFYVALMLSRLVQEVSVADVCEAFKVPRGMIQALQENAGRFASMVSLFCERLGWHDLEGLVAKFQNRVSFGVRAEIVELTTIPYVKGPRARALFKAGLRSPLAVAEASISDIAKAVFDSSVWSAQEGLAKKRIHMGVAKKIKNASRKIVLDKAEEARVAAFSTFKSLGINIPQLSHPMLTNIADNSFQHGSNTSSKFLESPFDNSASEDTKASNHPAVESKPMVLDSRSEETIAHNLNMNTDATIVTTGAAKFAGEVKHACYASTSDLIDTDFTKYKYSDQLLGNLVKPMAASTSTLEPANEACIVKHEPDKKGVMEEPLASHTSKSNFDKGPSCASTFPGGFDSFLEQWDHKQEFYFDLHYSKLPDQNSSLFFEVFGLAICWENSPVYYVNFLRDLLPSGEDSSFLGQLSNPNGDITKGLADFDRWTSTKSRWKKLGKIMSQNGARKVCWNLKTQIQVLKGPCISLQRFSRLGFEQNILKDTELIGSSYIMLPTIFILDGFDLCLMTWLLWPDEESKSTPSLEKLVKKRLSSQAAATASRDGRWRNQMRKAAHDGCCRRVAQTRVLSSVIWKLLVSENLVNALTRVENPLVNALADMEIWGVGVDMEACLRARHYLLRKLKELENDAHNHAGMQFSLFSTADIAHVLYTRLNLPVPNSSKSGKLHPSTNKHSLDLLRGQHPIISIIKEHRTLAKLLNSTLGSICSRARLCINSQRYIVRGRWLQTSTATGRLSMEEPNLQCVEHMVNFTTNYPNTKKLSSLGIIDQHQINPRDFVISTQENWLLLTADYSQIELRLMAHFSKDTSLTELLRKPDGDCFTMIAARWTGKLESAISSKEREQTKRLVYGILYGMGSNTLAEQLDCNSKEALQKIQTFKASFPGVSAWLNEAVSSCCDRGYVETIMGRKRFLSKINFGNNKEKAKAQRQAVNSICQGSAADVIKIAMIKIHKIIVDGDDKPNSDITSEMQFSSLRGQCRIILQVHDELVLEVDPRFVREAARLLQTSMEGAASLSGIISDYVKIPHTRFLSAVHLECVSLLSVTVPLRVQMKIGRTWGTQEPFSQ

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006260	Biological Process	DNA replication
GO:0006261	Biological Process	DNA-dependent DNA replication
GO:0003887	Molecular Function	DNA-directed DNA polymerase activity
GO:0003676	Molecular Function	nucleic acid binding
GO:0005524	Molecular Function	ATP binding
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.370
SRP064423	SRR2545915	Juvenile tuber	2.680
SRP108465	SRR5643513	five period of Gastrodia elata	1.980
	SRR5643514	five period of Gastrodia elata	2.000
	SRR5643515	five period of Gastrodia elata	1.550
	SRR5643524	five period of Gastrodia elata	1.730
	SRR5643525	five period of Gastrodia elata	1.620
	SRR5643528	five period of Gastrodia elata	2.510
	SRR5643658	five period of Gastrodia elata	0.960
	SRR5643659	five period of Gastrodia elata	1.960
	SRR5643660	five period of Gastrodia elata	2.360
	SRR5643661	five period of Gastrodia elata	1.740
	SRR5643662	five period of Gastrodia elata	1.170
	SRR5643663	five period of Gastrodia elata	1.800
	SRR5643664	five period of Gastrodia elata	1.550
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.870
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.790
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.410
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.570
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.320
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.350
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.600
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.850
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.270
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.980
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.420
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.420
SRP279888	Gastro	Gastrodia elata tuber	1.81
	Juven	Juvenile tuber	2.97
	Mother_Gastro	Mother tuber of Gastrodia elata	3.16
	Mother_Juven	Mother tuber of Juvenile	5.44