Detail information of GWHGAAEX012299/evm.TU.scaffold_42.105


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG17925.00E-104Reticulon
nrgi|743770957|ref|XP_010915765.1|6.12E-124PREDICTED: reticulon-like protein B2 [Elaeis guineensis]
Swissprottr|Q9SUT9|RTNLB_ARATH1.00E-104Reticulon-like protein B2
trEMBLtr|B3TLN1|B3TLN1_ELAGV2.00E-123Reticulon-like protein {ECO:0000256|RuleBase:RU210713}
TAIRAT4G112205.00E-104VIRB2-interacting protein 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005027408362743555+
Transcript Sequence

Network for GWHGAAEX012299

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02453.16Reticulon632171.80E-53
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms114.860
SRR2545915Juvenile tuber138.780
SRP108465SRR5643513five period of Gastrodia elata162.900
SRR5643514five period of Gastrodia elata148.980
SRR5643515five period of Gastrodia elata153.220
SRR5643524five period of Gastrodia elata166.940
SRR5643525five period of Gastrodia elata133.000
SRR5643528five period of Gastrodia elata196.990
SRR5643658five period of Gastrodia elata125.110
SRR5643659five period of Gastrodia elata152.250
SRR5643660five period of Gastrodia elata137.530
SRR5643661five period of Gastrodia elata149.360
SRR5643662five period of Gastrodia elata123.010
SRR5643663five period of Gastrodia elata131.880
SRR5643664five period of Gastrodia elata99.080
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1126.660
SRR6049655Rhizomagastrodiae_C368-T10_good_1170.780
SRR6049656Rhizomagastrodiae_C368-T07_good_1139.670
SRR6049657Rhizomagastrodiae_C368-T07_good_1108.200
SRR6049658Rhizomagastrodiae_C368-T04_good_1112.150
SRR6049659Rhizomagastrodiae_C368-T04_good_1105.350
SRR6049660Rhizomagastrodiae_C368-T01_good_1105.670
SRR6049661Rhizomagastrodiae_C368-T04_good_1119.330
SRR6049662Rhizomagastrodiae_C368-T01_good_1178.220
SRR6049663Rhizomagastrodiae_C368-T01_good_1141.380
SRR6049664Rhizomagastrodiae_C368-T10_good_1190.800
SRR6049665Rhizomagastrodiae_C368-T10_good_1190.800
SRP279888GastroGastrodia elata tuber 101.30
JuvenJuvenile tuber111.97
Mother_GastroMother tuber of Gastrodia elata 132.46
Mother_JuvenMother tuber of Juvenile 136.21