Gene detail

Detail information of GWHGAAEX012302/evm.TU.scaffold_42.108

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|108802877\|ref\|YP_642814.1\|	2.00E-25	serine/threonine protein kinase [Rubrobacter xylanophilus DSM 9941]
KOG	KOG0032	0	Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily
nr	gi\|593794171\|ref\|XP_007160124.1\|	0	hypothetical protein PHAVU_002G294500g [Phaseolus vulgaris]
Swissprot	tr\|Q42479\|CDPK3_ARATH	0	Calcium-dependent protein kinase 3
trEMBL	tr\|V7CRY2\|V7CRY2_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW32118.1}
TAIR	AT4G23650	0	calcium-dependent protein kinase 6

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000050	2795976	2818021	-

Transcript Sequence
>GWHTAAEX012302 AGGAAAGCTTAATTAGCATTTATCTCGCTCCGATCATCACGGGTCCACCCGGTTAAGTCAAACCGCCCGCGGCCGGCTGGGGAAACCACTGAACCGGTCCCATGTTTGGTACTCCGGCCAAACAGTACTCCCTTCCCGCACTATAAAGACTTCCGTCGTCTCGTGCTGCTTTCTCCCATTCTTCCGACCGCTCCTCCGCTCTCTATGGGTAATCGAAACAGCAGGCACTCATCCCACACCGATCCTCCAGCAGGAAATCAGTCGTATTCCACCTCCCCCTCTGTCACCGGTAAGCCATCCGCCTTCTCACCGCCTCTTCCACCTCCTTCCCGTCCTATCGCCGGCGGCATAGGCCGGGTTCTAGGTCGCCCCATGGAAGACGTCCGCGAAACCTACAACTTCGGCCGTGAGCTAGGCCGCGGTCAGTTCGGGGTAACCTACCTCGTCGCCCACAAGAAGTCGGGCGAGCTTTTCGCCTGCAAGTCGATTGCAACCAGGAAGCTGCTGAATCGAGAAGACGTCGACGATGTGCGGCGCGAGGTCCAGATCATGCACCACCTCACCGGACACCGCAACATAGTTGAGCTCCGTGGTGCGTACGAGGACCGCAATTCGGTTAACCTTGTCATGGAACTCTGCGAGGGCGGCGAGCTCTTCGACCGTATAATCGCAAAGGGCCATTACTCAGAGCGCGCTGCTGCCAATCTCTGCCGCGAGATTATCACCGTCGTGCACAACTGCCATTCCATGGGGGTCATGCACCGTGATCTGAAGCCCGAGAATTTTCTCTTTTTGAATGAGAAGGAAAATTCCCCCCTCAAGGCTACGGATTTCGGGCTTTCTGTTTTCTTCAAACCTGGAGAAACATTCAAGGACCTTGTGGGAAGTGCATACTATGTAGCTCCTGAAGTTTTGCGACGAGACTATGGACCGGAAGCTGACATATTTAGTGCTGGAGTGATGCTCTACATCCTTCTTTCTGGTGTTCCTCCTTTCTGGGGAGAGAATGAGCAAGCCATATTTGATGAAATTTTGCATGGGCGCCTTGATTTCTCGGATGATCCTTGGCCTTCTATATCAAATAGTGCTAAGGAATTGGTGAAGAAAATGCTAAGGCAAGATCCAAAGGAGCGGCTTACTGCAGTTGAAGTTTTGAATCATCCATGGATTAGGGTTGATGGTGAGGCGTCTGATAAACCTATTGATATTGCAGTATTGACAAGAATGAAACAGTTCAGAGCTATGAACAAGCTCAAGAAAGTTGCATTGAAGGTTATTGCTGAAAGTTTGTCAGAAGAAGAAATAATGGGTTTGAAAGAAATGTTTAGATCTATGGATACTGACAATAGTGGCACAATAACTTTTGAAGAGCTGAAAGCTGGTTTGCCAAAACTAGGCAGTAAACTTTCTGAATCGGAAGTCATGCAGTTAATGGAAGCGGCTGATGTGGATGGAAATGGGGCTATTGACTATATTGAATTTATAACGGCCACAATGCACATGAACCGGATGGAAAAAGAAGATCATTTGTACAAGGCATTTGAATACTTTGATGAGGATAGGAGTGGTTACATTACTAAGGACGAACTGGAGCAAGCTCTAAAGAAATATAATATGGGTGATCCTACGACGATAAAAGAGATTATAGCAGAAGTTGACAGTGATAATGTAAGATTATTTAATTCATATTATTTTTATGCATATTTGTGAAGATCAGTTCTAGGTTTGTGTGATACGTTGAAGAATTTTTGGCTGGGGAGGTGCTCATTATACTAGTCCAGGGTTCACACACAATCATAAACGACATCTTTTGGGATATAATATATGTTATGATCTGCAATCTCTTGCAAATTGAACCTTGTCTTTTCTATTCTTACTCCCTTAAAACAGAACAAACTTAGGAGACTTGTAAACTATAAGGGGTTATAAAAAAAAGTCAAATGATTAGATAAATCTTATACTATTCTGCTGATTCTATCCAC

Network for GWHGAAEX012302

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	64	322	4.20E-73
PF13499.5	EF-hand_7	370	430	8.80E-10
PF13405.5	EF-hand_6	442	468	1.40E-07

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CDPK

KEGG pathway

KO	Enzyme	pathway	mapID
K13412	CPK	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0005509	Molecular Function	calcium ion binding
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	36.260
SRP064423	SRR2545915	Juvenile tuber	33.560
SRP108465	SRR5643513	five period of Gastrodia elata	43.650
	SRR5643514	five period of Gastrodia elata	47.530
	SRR5643515	five period of Gastrodia elata	41.330
	SRR5643524	five period of Gastrodia elata	47.030
	SRR5643525	five period of Gastrodia elata	22.630
	SRR5643528	five period of Gastrodia elata	33.030
	SRR5643658	five period of Gastrodia elata	20.090
	SRR5643659	five period of Gastrodia elata	39.560
	SRR5643660	five period of Gastrodia elata	42.980
	SRR5643661	five period of Gastrodia elata	41.170
	SRR5643662	five period of Gastrodia elata	35.860
	SRR5643663	five period of Gastrodia elata	35.790
	SRR5643664	five period of Gastrodia elata	32.900
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	51.160
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	78.840
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	55.470
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	49.970
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	49.400
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	51.900
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	53.550
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	47.570
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	61.320
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	59.590
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	64.670
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	64.670
SRP279888	Gastro	Gastrodia elata tuber	34.77
	Juven	Juvenile tuber	66.92
	Mother_Gastro	Mother tuber of Gastrodia elata	49.63
	Mother_Juven	Mother tuber of Juvenile	62.97