Gene detail

Detail information of GWHGAAEX012309/evm.TU.scaffold_42.115

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|720088310\|ref\|XP_010244411.1\|	7.64E-174	PREDICTED: uncharacterized protein LOC104588253 isoform X2 [Nelumbo nucifera]
Swissprot	tr\|Q6NQK2\|NAC8_ARATH	5.00E-69	NAC domain-containing protein 8
trEMBL	tr\|A0A067EL13\|A0A067EL13_CITSI	4.00E-172	Uncharacterized protein {ECO:0000313\|EMBL:KDO55869.1}
TAIR	AT4G29230	1.00E-119	NAC domain containing protein 75

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000050	2988278	2994348	-

Transcript Sequence
>GWHTAAEX012309 AAATATTTGTAAGCCATATTTAAGTTTTCCTCTCCAAAGTTTGGTCTCTAGATCCCATGTGTTCCAAAATTCTTTTTCTGACAATATTTTATAAGAAATCCATCGAGTGTACTGCTCATTTGCCTTGCATCATAAGCAACCGTTGGATTCACCTTCTCTCTCTCTCTCTCTAAGGTTTCAGAGCAATACTCTTGCAGAAAAAGGATCATCATTTCAGCACAATAAGAAAACCCATGTGAGCTCTCTCAGCACCCTCACTTCTTTTCCGTTCTTCTTTCCCCTTTTTCTCGCCTCGCTCCTCTTTTGAATCTCCTGTATCGCAACGGTCTAACAATTTATCTATCTTGAGCTGTGTTTCTGAAGATGTATCTCTATATAGTTTTTTGCATATCTTTATAGGTTAAAGTAGGTGAATTTCCTTTGAACTCTGTTTATTTTCTCCTTTTCGCGTGTTATATAATTGCTTCCGAATTCAGCACCCAAACTCTTCTCTTCTTGCCTTCTCTTCATCTCCATTCATGGCGTAATGCATGGCTGATTCACAATATTTATGATGAGGAGAATTACTAAATGAAGAGATATTCCAGTCATGAGCAGAAGCAACATAGAGGAGCATCAGATCATGAGCGCATCAAGCCAGTGCCCAAGCTGCGGCCACAAACTCGAAAGAAAGCCAGATTGGTATGGGCTGCCAGCGGGGGTTAAATTCGATCCCACAGATCAAGAACTTATAGAACATCTTGAAGCTAAAGTTTCTACTCAATCAAGCTTGAGATCTCACCCTCTCATAGATGAATTCATACCCACAATTGAAGGAGAAGATGGAATATGCTACACTCATCCTGAGAAACTTCCAGGTGTAACAAGAGACGGATTGAGCAAGCACTTCTTCCACCGACCCTCGAAGGCGTACACGACGGGGACTAGGAAGAGGAGAAAGATACAGACGGAGGTGGACGTCGCACGAGGGGAGACGCGGTGGCACAAGACCGGGAAGACGAGGCCGGTAACGGCGGGTGGAAAGCAGAAGGGGTGCAAGAAGATACTCGTCCTCTACACGAACTTTGGCAAGCACCGGAAGCCGGAGAAGACGAATTGGGTGATGCACCAGTATCACTTAGGGGAGCACGAGGAGGAGAAGGAAGGCGAGCTCGTGGTCTCCAAGATATTCTACCAGACACAGCCGAGGCAGTGCGGCTGGTCCACCACGGGACCCACCGCAAAGGAGGCTGTGGGCTCTGCCGCTGCTGATGTGGCACAAGTAATGGCCGTCTATCCTGGTTTGGACCATCTGAAGCATAAGCAGCAGCTGAGCCAGACTCCTGATAGCTTCAGCTTTGCCCCTTTCAGGAAGAGTTTTGATGAGGTAGGGATAAGAGAACCAGCTGCAGCTCATTCAGCAGAGGCTTCCATGAGCCAAGAGGATCACAAAGAACATGATATTCATCATCATCATCATCATCATCATCATCATAGAACGGCCGCAGCAGTTTCTACCTCCTCTGCCTTCCACGTTAGCAGGCCTAGTAATCCCATATCTGCAATAATCTCTCAAGCTACATTGCAGCAGAGCTCCATGGTTCTTGATGATCCTTATAGTGTCTCGAGAATTCTTCTTCAAGAGCAACAGCAGCAGCAGCAACAAAAACTGGTGAATAGATCGAGTGGTGCTGGTCTAGAGGATTTGATAATGGGCTGCACTCCTGCAGATATTAAAGTGCAGGAAACATCAATTCCGCATTCACAAGAGACAGAGTGGCTAAAGTACTCTTATTGGTCACCACCTGACAGCCATGATCATCATGGATAATAACAATGAGAGGAAAAAAACTATTAAGGAAATATTTAATTATTATTAAGTACTTTTTGCATGGAAATTCTTCTTGTTAAAAGGACTCAAGTGAGGAAAACTAGGAAAAGGATCACTTCTCAGTCTCTCCATCTCGCTTCTTTCACAAGACATTGGACAATGAGCTAAAGGCTCAACTGCCAAACCTAACTGCATGAGAGCGTAGGTTGGAAGGAAACAAAGTTCAAAAGGCTGTTGAGAAGGAAAAGAGAAGGATATGATTCAAGAAGAAAACAAAGATTGGAAGGATATATATATATATATAT

Network for GWHGAAEX012309

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.14	NAM	35	177	2.20E-25

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.970
SRP064423	SRR2545915	Juvenile tuber	13.460
SRP108465	SRR5643513	five period of Gastrodia elata	4.250
	SRR5643514	five period of Gastrodia elata	6.070
	SRR5643515	five period of Gastrodia elata	3.350
	SRR5643524	five period of Gastrodia elata	4.920
	SRR5643525	five period of Gastrodia elata	12.500
	SRR5643528	five period of Gastrodia elata	9.250
	SRR5643658	five period of Gastrodia elata	6.850
	SRR5643659	five period of Gastrodia elata	1.580
	SRR5643660	five period of Gastrodia elata	1.220
	SRR5643661	five period of Gastrodia elata	1.040
	SRR5643662	five period of Gastrodia elata	1.250
	SRR5643663	five period of Gastrodia elata	0.780
	SRR5643664	five period of Gastrodia elata	1.320
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.070
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.950
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.000
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.750
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.400
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.600
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.100
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.200
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.350
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.370
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.020
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.020
SRP279888	Gastro	Gastrodia elata tuber	3.14
	Juven	Juvenile tuber	1.43
	Mother_Gastro	Mother tuber of Gastrodia elata	10.85
	Mother_Juven	Mother tuber of Juvenile	15.77