Detail information of GWHGAAEX012310/evm.TU.scaffold_42.116


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|568853989|ref|XP_006480618.1|1.16E-154PREDICTED: syntaxin-71-like [Citrus sinensis]
Swissprottr|Q9SF29|SYP71_ARATH1.00E-144Syntaxin-71
trEMBLtr|A0A067EIL9|A0A067EIL9_CITSI4.00E-155Uncharacterized protein {ECO:0000313|EMBL:KDO51072.1}
TAIRAT3G097404.00E-144syntaxin of plants 71

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005030598123098382-
Transcript Sequence

Network for GWHGAAEX012310

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05739.18SNARE2112602.70E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08506SYP7 SNARE interactions in vesicular transport map04130

Gene Ontology

GO term OntologyName
GO:0006886Biological Processintracellular protein transport
GO:0005484Molecular FunctionSNAP receptor activity
GO:0016020Cellular Componentmembrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms53.500
SRR2545915Juvenile tuber65.140
SRP108465SRR5643513five period of Gastrodia elata45.850
SRR5643514five period of Gastrodia elata46.060
SRR5643515five period of Gastrodia elata46.460
SRR5643524five period of Gastrodia elata46.440
SRR5643525five period of Gastrodia elata56.970
SRR5643528five period of Gastrodia elata65.600
SRR5643658five period of Gastrodia elata60.940
SRR5643659five period of Gastrodia elata38.820
SRR5643660five period of Gastrodia elata29.690
SRR5643661five period of Gastrodia elata30.800
SRR5643662five period of Gastrodia elata34.450
SRR5643663five period of Gastrodia elata32.330
SRR5643664five period of Gastrodia elata32.390
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_150.750
SRR6049655Rhizomagastrodiae_C368-T10_good_154.640
SRR6049656Rhizomagastrodiae_C368-T07_good_158.030
SRR6049657Rhizomagastrodiae_C368-T07_good_158.820
SRR6049658Rhizomagastrodiae_C368-T04_good_158.870
SRR6049659Rhizomagastrodiae_C368-T04_good_162.220
SRR6049660Rhizomagastrodiae_C368-T01_good_156.670
SRR6049661Rhizomagastrodiae_C368-T04_good_159.290
SRR6049662Rhizomagastrodiae_C368-T01_good_158.950
SRR6049663Rhizomagastrodiae_C368-T01_good_156.230
SRR6049664Rhizomagastrodiae_C368-T10_good_155.870
SRR6049665Rhizomagastrodiae_C368-T10_good_155.870
SRP279888GastroGastrodia elata tuber 43.63
JuvenJuvenile tuber61.95
Mother_GastroMother tuber of Gastrodia elata 79.40
Mother_JuvenMother tuber of Juvenile 95.40