Gene detail

Detail information of GWHGAAEX012320/evm.TU.scaffold_42.128

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|385802428\|ref\|YP_005838828.1\|	9.00E-77	DEAD/DEAH box helicase [Haloquadratum walsbyi C23]
KOG	KOG0951	0	RNA helicase BRR2, DEAD-box superfamily
nr	gi\|743767197\|ref\|XP_010913855.1\|	0	PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Elaeis guineensis]
Swissprot	tr\|Q588V7\|TEB_ARATH	3.00E-26	Helicase and polymerase-containing protein TEBICHI
trEMBL	tr\|A0A061FY62\|A0A061FY62_THECC	0	U5 small nuclear ribonucleoprotein helicase, putative isoform 1 {ECO:0000313\|EMBL:EOY19724.1}
TAIR	AT1G20960	0	U5 small nuclear ribonucleoprotein helicase, putative

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000050	3428471	3437560	+

Transcript Sequence
>GWHTAAEX012320 CCGCTTTGCATGGAAGATGTAAACATTCGGCTCATTTTCACCGCCTTAGGCTGGCGCGCTAGTCCTCCTGCTCGCACTATCCGAATCCTCAACACTAGATCCGGCTCTCACGTATATCTGGTCGTGCAATTAGGGCATCCGCCTTCTTCGAGCAATGGCTCATCTAGGCGGAGGCGCTGAAGCCCATGCTCGCTTCAAGCAGTACGAGTATCGCGCCAATTCGAGCCTTGTTCTTACCACCGATTCTCGACCCCGAGACACCCACGAACCCACTGGCGAGCCCGAGTCTCTCTGGGGGAAGATCGATCCCAAAAGCTTCGGGGACAGAGCATACAGAGGAAAGCCCCCGGAGCTTGAGGAGAAGATCAATAAGTCTAAGAAGAAGAAGGAGCGGGAGCCAGGCGCAGAGCAGGAGCAGAGAAAGGATAGCAAGAAGAGGCGCATCCAGGAGGAGACTGTTCTCTCACTCGCTGATGATGGCGTCTATCAACCCAAAACTAAGGAAACCCGTGCTGCTTATGAGGCATTGCTTAGTATCATACAGCTGCAGTTTGGCGGGCAGCCGCAGGATGTTCTTACCGGGGCTGCTGATGAGGTGTTGGCAGTTCTGAAGAATGATAAGATTAAGAATCCTGATAAGAAGAAGGATATTGAGAGGCTGTTGAATTCCATTTCAAGCCAGACTTTTGACCATCTTGTTTCTATTGCACGGTTGATCACAGATTATCAGGATGGGCCCGAAACTGCTGCTCCGGTGGCTGCAAATGGGAATGACGGCACCCTTGATGATGACATTGGTGTTGCTGTTGAATTTGAAGAAGATGAGGAGGAAGAAAGTGACTTTGATCAGGTTCAAGAGGAATCCGAGGAGGACGATGATGGTCAGGAACCAAATGACATGGGTGCCATGCAGATGGGCGGAATAGATGATGATGAAATGGAGGAAGCTAACGAGGGCTTGACTTTGAATGTACAAGATATTGATGCTTATTGGCTGCAGAGGAAGATCTCTCAAGCTTTTGAGAATATTGACCCACAGCAAAGCCAAAAGATTGCAGAAGAAGTGCTAAAAATCTTGGCTGAAGGTGATGATAGGGATGTTGAGAATCGGCTTGTCACATTACTTGAATATGATAAGTTCGATCTTATAAAACTTCTTTTAAGAAATAGACTTAAGATAGTATGGTGCACACGTTTGGCGAGGGCGGAGGACCAAGAGCAACGGAGGAAAATTGAAGAAGAGATGATGAATTTTGGGCCGAGCTTGGCTTCAATCTTGGAGCAGTTGCATGCTACTAGAGCATCTGCAAAAGAACGTCAAAAGAACTTGGAAAAGAGCATTAGGGATGAAGCCAGACGATTAAAGGATGATCGAGCTTCGGGGGATGATAGGGAACAAAGGTTTGTGGAAAGAGAAGCAGATAGTAGCTGGTTAAAAGGTCAAAGACAGTTGCTTGATTTAGAAATCCTTGCATTTCAGAAAGGCGGCCTTTTGATGGCAAATAAGAAGTGCGAACTTCCTCCAGGATCTTATAGAACTCCCCACAAGGGATATGAGGAAGTTCGTGTGCCAAGATGGAAGCCTGAACCACTTGGATCTGGTGAGAAGCTAGTTAAGATATCGGATATGCCTGACTATGCACGTCCAGCTTTTGAAGGGATGAAGCAGTTGAACAGAGTTCAAAGCAAAGTTTATGAAACTTCTCTTTTTACGCCTGAAAATATACTTTTATGTGCTCCAACTGGCGCTGGAAAAACAAATGTAGCTATGCTGACTATACTTCATGAGATTGCTTTGCATTGGAAAGATGGGGAGGTTGACACCAGCGAGTTTAAGATTGTATATGTGGCACCAATGAAAGCTTTAGTTGCTGAGGTTGTTGGGAACTTGTCTAATCGCTTACAGTCGTATAACATTGTTGTGAGGGAACTTAGTGGCGATCAATCACTAACTCGCCAACAAATTGAAGAAACACAGATTATTGTTACAACACCTGAGAAATGGGATATTGTTACTAGAAAATCGGGAGATAGAACGTACACTCAGATGGTAAAACTCCTCATTATTGATGAGATTCATCTCCTGCATGATAACCGAGGTCCTGTTTTGGAAAGTATAGTTGCCAGAACAGTTAGACAAATTGAGACTACAAAAGATCTTATTCGCTTAGTTGGATTATCAGCCACACTCCCAAATTATGAAGATGTTGCATTATTCTTGCGTGTAAATCCCTTGAAAGGGCTATTTTATTTTGATAATAGCTATAGGCCATGCCCACTTGACCAACAGTACATAGGAATTACTGTGAAGAAACCGCTGCAAAGATTTCAGTTAATGAATGAAATCTGTTATGAAAAGGTTAAGGCTGCTGCTGGAAAACATCAAGTTCTTATATTTGTTCACTCTAGAAAAGAGACGGTAAAAACTGCTCGTGCAATCAGGGACACTGCATTGGCTAATGATGCTTTAAGTCTTTTTTTGAAAGATGACAGTGCAAGCCGTGAGATTCTTCAGAGCCAAACAGAACTTGTTAAAAGCAATGATGTGAAAGATTTACTTCCATATGGCTTTGCTATTCATCATGCTGGAATGATGAGAGTTGATCGAGATATTGTGGAGGAGCTGTTTGCTGATGGACATGTTCAGGTGTTGGTCTCAACAGCCACCCTTGCGTGGGGTGTCAACTTGCCAGCCCATACTGTTATCATTAAAGGGACTCAAGTGTATAATCCAGAGCAAGGAGCATGGACCGAACTTAGTCCTTTGGATGTTATGCAGATGCTTGGTCGTGCTGGAAGGCCTCAGTATGACTCATATGGAGTGGGAATAGTTTTAACAGGCCACAGTGAGCTGCAATACTATCTCTCTCTCATGAATCAACAACTGCCAATTGAAAGTCAGTTTGTTTCAAAGCTGGCCGATCAGCTAAATGCAGAGATCGTTCTAGGAACTGTTCAGAATGCACGAGAAGCATGTACTTGGATTGGGTACACCTATCTTTACATTCGCATGCTGCGGAACCCAACACTTTATGGTCTGCCGGCTGACATTTTAGATAAAGATAAAACTTTAGAGGAGCGAAGAGCTGATTTGATCCATTCAGCTGCAAGTATCCTGGATAAGAACAATCTTATCAAGTATGATAGAAAGAGCGGGTATTTTCAGGTCACTGATCTTGGCAGAATTGCAAGTTATTACTATATAACTCATGGAACAATATCAACATACAATGAGTACCTGAAACCAACCATGGGTGATATTGAACTTTGCAGATTGTTTTCTCTTAGTGAAGAATTTAAATATATTACTGTAAGGCAAGATGAGAAGATGGAGTTGGCAAAGCTCTTGGATAGAGTTCCCATTCCAGTGAAAGAAAGCTTAGAAGAGCCCAGTGCAAAGATTAATGTTCTTCTACAGGCTTACATATCACAGCTGAAGCTTGAGGGACTCTCATTGGCATCTGATATGGTTTTTATCAGACAGAGTGCTGGCCGTCTCCTTCGAGCTCTATTTGAGATTGTTTTAAAGAGGGGTTGGGCTCAACTAGCTGAGAAGGCTTTGAACATGTGTAAGATGGTTGATAAACGCATGTGGAACGTTCAGACTCCATTACGCCAGTTCCATGGTATACCGAATGAAATCTTAATGAAGCTGGAAAAGAAGGATTTGTCCTGGGAAAGATACTATGATCTCAGCACGCAGCAACTAGGAGAGCTTATTCGCTTTCCTAAGATGGGAAAACCACTTTACATGTGCATTCACCAATTGCCAAAAGTTAACTTAACTGCACATGTTCAACCCATCAATCGAACTATTCTGGGTTTTGAGCTTACCATAACGCCAGATTTTCAGTGGGATGATAAAGTGCATGGTTTTGTTGAACCTTTTTGGGTTATTGTTGAAGATAATGATGGTGAATATGTTCTTCATCACGAGTATTTTATACTAAAGAAGCAGTATGTTGAAGAAGACCACACTTTGAGTTTCACTGTGCCCATTTATGAGCCCCTGCCACCTCAATATTTTATTCGTGTAGTTTCTGATCGATGGCTTGGTTCTCAAACGGTATTACCTGTTTGTTTTAGACATCTCATCCTACCTGAAAAATATGCCCCACCAACTGAATTACTCGATCTGCAACCCCTCCCTGTGACTGCATTGAGGAATCCTTCTTATGAAGCTCTTTATGACACTTTCAAGCATTTTAATCCTATCCAAACTCAAGTTTTTACTGTCTTATATAATACCGATGACAATGTCCTGGTTGCAGCACCAACAGGCAGCGGGAAGACCATATGTGCAGAGTTTGCCGTCCTGAGAAATCATCAGAAGCTCCCTGAGAGCATAATGCGTGTTGTATATATTGCTCCAATAGAGGCTTTAGCAAAGGAAAGAAATCGCCATTGGCAAGAGAAATTTGGAAAGCACCTAGGTATTTCTGTTGTGGAATTGACAGGTGAGACGGCAACTGATTTGAAACTGCTTGAAAACGGACATATAATCATCAGCACTCCAGAGAAATGGGATGCCCTTTCTCGTCGTTGGAAGCAGCGCAAACACGTTCAGCAGGTTAGCCTTTTTATTGTTGATGAACTTCATTTGATTGGCGGGTCGGTCGGGCCGGTCTTGGAGATAGTTGTCTCGAGAATGAGGCATATTGCTAGTCTTCCCACTTCAAGCATCCGTGTGGTGGCTCTTTCAGCATCCCTTGCAAATGCTAAGGACCTTGGTGAATGGATCGGCGCCACCTCTCACGGTCTCTTTAATTTTCCTCCCGGTGTTCGCCCCGTGCCATTGGAGATACACATTCAAGGTGTTGACATAGCAAATTTTGAAGCCAGGATGCAGGCAATGACAAAACCTACTTACACTGCCATTGTCCAACATGCAAAAAATGGAAAACCTGCTCTGGTATTTGTACCCACAAGAAAGCATGCCAGACTGACAGCCCTTGACTTGTGTGCCTACTCGGGTGCTGAAAGTTCTGAAAATCCTTCGTTTTTTCTTGGACCTGTGGATGAGATGGCAACGTTCATTTCCGGAATCAAGGAGGAGACTTTAAAGGAAACACTCCCTATGGGTGTTGGCTACCTTCATGAAGGGCTGAGTGACCTCGATCAGGAAGTTGTGAAGCAGTTATTCTTTGGAAGAAGGATTCAAGTTTGTGTTGCGAGTGGTTCAATGTGTTGGGGAATGTCGTTGCCCTCTCATTTGGTCGTCGTCATGGGCACCCAATATTATGATGGGCGAGAGAATGCTCATACAGACTATCCCATCACTGATTTACTGCAGATGATGGGACATGCAAGTAGGCCTCTTATAGACAATTCTGGAAAATGTGTCATCCTATGTCATGCTCCACGGAAGGAATACTACAAGAAGTTTCTTTACGAGGCATTCCCTGTTGAGAGTCATCTGCATCACTTTATACATGACCATATGAATGCTGAAGTAGTAGCTTCTGTTGTCGAGAGCAAGCAGGATGCAGTTGATTACCTTACATGGACTTTTATGTACCGAAGGCTCACAAAAAATCCCAATTATTACAATCTACAGGGTGTCAGCCACAGGCATCTCTCCGACCATCTTTCTGATCTTGTTGAGAATACATTGAATGACTTGGAGTCGAGCAAGTGCATTATCATCGAAGAGGATATGTTTCTCAAAGCCTCTAATCTTGGGCTGATTGCTTCCTACTACTACATTAGCTACACTACTGTAGAGCGTTTCAGCTCATCCTTGTCCCCAAAAACTAAACTGAAGGGTCTTCTTGATATCTTAGCTGCTGCCTCGGAGTACTCCCAGCTCCCAATTCGACCTGGGGAGGAGGAACTGATAAGGAGACTTATTCATCACCAAAGGTTTTCTTTTGAAAATCCCAAGTGCACAGATCCACATGTTAAGGCGAATGCACTCCTGCAGGCTCATTTCTCCCGTCACACCGTTGTTGGAAACTTGGCGACGGACTTGCATGAGGTGCTTCTTTCAGCCCACCGTCTTCTTCAGGCCATGGTTGATGTCATTTCCAGCAATGGCTGGCTCTCCCTTGCGCTTCTTGCAATGGAAATGTGTCAGATGATCACGCAGGGCATGTGGGAGCGAGACTCCATGCTGCTCCAGCTTCCTCATTTTTCCAAGGATCTAGCGAGCCGGTGCCAAGAGAACCCGGGGAGAAGCATTGAGACGGTTTTTGATCTGGTAGAAATGGAGGATGACGAAAGGCGCGAGCTACTGCAGATGTCCGACGTCCAGATGCTTGATATTGCTCGATTTTGCAACCGTTTCCCGAACATTGACATGACTTACGAGGTCCTGAAGTCGGATGATATCCATGCCGGTGAAGATGCCACGTTGCTTGTAACACTAGAACGAGATCTGGAGGGTCGCTCCGAGGCCGGACCTGTCGATGCTTCGCGATATCCCAAGTCTAAAGAAGAAGGATGGTGGGTCGTTGTTGGAGACAGCGGCAGCAACCAATTGCTTGCTATTAAGAGAGTTGTGCTGCAAAGAAGAGCTAAGGTTAAGCTTGTTTTCTCGGTCTCTAAAGATGCTGGGAAGAAGTCCTTCACAATCTACTTCATGTGCGACTCCTACCTGGGTTGTGACCAGGAGTACAGTTTTACAGTGGATGTCAAAGAGTCCAGGTAAGTATGATAAATTAATATGTAATTTTTAGAGCAAACATTAAGTGCATACACCTTTATATTCGAATTTTGTGTTATAAAGGTTTTTATGATGAGTATTAGGGTTTTTTTCCCAACTTAGCTTTTTCCATATATGACTCAGTTTCTATGCTGTGGTATGTTTTTTAATTGTAATGAAATAGTTTTGTTGTTCTGTAAATTATAATATTGTTCTCTTCTAATCCAAAATATTAGCTTGCTAGCCAC

Network for GWHGAAEX012320

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.28	DEAD	508	682	2.70E-25
PF00271.30	Helicase_C	730	882	3.30E-08
PF02889.15	Sec63	1006	1307	2.30E-90
PF00270.28	DEAD	1353	1522	1.40E-23
PF02889.15	Sec63	1840	2156	1.50E-74

Protein Sequence

>GWHPAAEX012320
MAHLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPKSFGDRAYRGKPPELEEKINKSKKKKEREPGAEQEQRKDSKKRRIQEETVLSLADDGVYQPKTKETRAAYEALLSIIQLQFGGQPQDVLTGAADEVLAVLKNDKIKNPDKKKDIERLLNSISSQTFDHLVSIARLITDYQDGPETAAPVAANGNDGTLDDDIGVAVEFEEDEEEESDFDQVQEESEEDDDGQEPNDMGAMQMGGIDDDEMEEANEGLTLNVQDIDAYWLQRKISQAFENIDPQQSQKIAEEVLKILAEGDDRDVENRLVTLLEYDKFDLIKLLLRNRLKIVWCTRLARAEDQEQRRKIEEEMMNFGPSLASILEQLHATRASAKERQKNLEKSIRDEARRLKDDRASGDDREQRFVEREADSSWLKGQRQLLDLEILAFQKGGLLMANKKCELPPGSYRTPHKGYEEVRVPRWKPEPLGSGEKLVKISDMPDYARPAFEGMKQLNRVQSKVYETSLFTPENILLCAPTGAGKTNVAMLTILHEIALHWKDGEVDTSEFKIVYVAPMKALVAEVVGNLSNRLQSYNIVVRELSGDQSLTRQQIEETQIIVTTPEKWDIVTRKSGDRTYTQMVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKDLIRLVGLSATLPNYEDVALFLRVNPLKGLFYFDNSYRPCPLDQQYIGITVKKPLQRFQLMNEICYEKVKAAAGKHQVLIFVHSRKETVKTARAIRDTALANDALSLFLKDDSASREILQSQTELVKSNDVKDLLPYGFAIHHAGMMRVDRDIVEELFADGHVQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEQGAWTELSPLDVMQMLGRAGRPQYDSYGVGIVLTGHSELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAREACTWIGYTYLYIRMLRNPTLYGLPADILDKDKTLEERRADLIHSAASILDKNNLIKYDRKSGYFQVTDLGRIASYYYITHGTISTYNEYLKPTMGDIELCRLFSLSEEFKYITVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLASDMVFIRQSAGRLLRALFEIVLKRGWAQLAEKALNMCKMVDKRMWNVQTPLRQFHGIPNEILMKLEKKDLSWERYYDLSTQQLGELIRFPKMGKPLYMCIHQLPKVNLTAHVQPINRTILGFELTITPDFQWDDKVHGFVEPFWVIVEDNDGEYVLHHEYFILKKQYVEEDHTLSFTVPIYEPLPPQYFIRVVSDRWLGSQTVLPVCFRHLILPEKYAPPTELLDLQPLPVTALRNPSYEALYDTFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICAEFAVLRNHQKLPESIMRVVYIAPIEALAKERNRHWQEKFGKHLGISVVELTGETATDLKLLENGHIIISTPEKWDALSRRWKQRKHVQQVSLFIVDELHLIGGSVGPVLEIVVSRMRHIASLPTSSIRVVALSASLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDIANFEARMQAMTKPTYTAIVQHAKNGKPALVFVPTRKHARLTALDLCAYSGAESSENPSFFLGPVDEMATFISGIKEETLKETLPMGVGYLHEGLSDLDQEVVKQLFFGRRIQVCVASGSMCWGMSLPSHLVVVMGTQYYDGRENAHTDYPITDLLQMMGHASRPLIDNSGKCVILCHAPRKEYYKKFLYEAFPVESHLHHFIHDHMNAEVVASVVESKQDAVDYLTWTFMYRRLTKNPNYYNLQGVSHRHLSDHLSDLVENTLNDLESSKCIIIEEDMFLKASNLGLIASYYYISYTTVERFSSSLSPKTKLKGLLDILAAASEYSQLPIRPGEEELIRRLIHHQRFSFENPKCTDPHVKANALLQAHFSRHTVVGNLATDLHEVLLSAHRLLQAMVDVISSNGWLSLALLAMEMCQMITQGMWERDSMLLQLPHFSKDLASRCQENPGRSIETVFDLVEMEDDERRELLQMSDVQMLDIARFCNRFPNIDMTYEVLKSDDIHAGEDATLLVTLERDLEGRSEAGPVDASRYPKSKEEGWWVVVGDSGSNQLLAIKRVVLQRRAKVKLVFSVSKDAGKKSFTIYFMCDSYLGCDQEYSFTVDVKESR

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12854	SNRNP200, BRR2	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	79.410
SRP064423	SRR2545915	Juvenile tuber	72.740
SRP108465	SRR5643513	five period of Gastrodia elata	33.670
	SRR5643514	five period of Gastrodia elata	34.830
	SRR5643515	five period of Gastrodia elata	31.390
	SRR5643524	five period of Gastrodia elata	33.870
	SRR5643525	five period of Gastrodia elata	26.380
	SRR5643528	five period of Gastrodia elata	20.020
	SRR5643658	five period of Gastrodia elata	24.360
	SRR5643659	five period of Gastrodia elata	53.790
	SRR5643660	five period of Gastrodia elata	63.300
	SRR5643661	five period of Gastrodia elata	52.190
	SRR5643662	five period of Gastrodia elata	45.570
	SRR5643663	five period of Gastrodia elata	49.210
	SRR5643664	five period of Gastrodia elata	54.870
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	45.340
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	34.440
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	40.600
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	46.700
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	47.830
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	56.240
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	47.830
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	50.780
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	37.500
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	42.670
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	35.600
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	35.600
SRP279888	Gastro	Gastrodia elata tuber	60.34
	Juven	Juvenile tuber	71.03
	Mother_Gastro	Mother tuber of Gastrodia elata	34.21
	Mother_Juven	Mother tuber of Juvenile	53.46