Gene detail

Detail information of GWHGAAEX012327/evm.TU.scaffold_42.137

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|13542321\|ref\|NP_112009.1\|	2.00E-30	RNA helicase (ERCC4-like) [Thermoplasma volcanium GSS1]
KOG	KOG0701	0	dsRNA-specific nuclease Dicer and related ribonucleases
nr	gi\|743825004\|ref\|XP_010932925.1\|	0	PREDICTED: endoribonuclease Dicer homolog 3a-like [Elaeis guineensis]
Swissprot	tr\|Q5N870\|DCL3A_ORYSJ	0	Endoribonuclease Dicer homolog 3a
trEMBL	tr\|A0A061GJM5\|A0A061GJM5_THECC	0	Ribonuclease III, putative isoform 1 {ECO:0000313\|EMBL:EOY30080.1}
TAIR	AT3G43920	0	dicer-like 3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000050	3596173	3650434	-

Transcript Sequence
>GWHTAAEX012327 CCGGCACCGTTTCATTTTCAAGTCTGGAGACTTTCGCACCACCGTTTCCCGCAGTTCAGTTCCTCTATCCTTTATATTTTTTTGTCTGAAAGCCTCTAAAACCCTGTGCGCAATGGAGACATCCCCATCAAAAAATCTCCATAAAAGGCCTATTGAATCGGTAGATGGAGAAGAAGCGGAACTCAAAACAGATGTTAAGAGGCAGAGCAAATGTTCTAAGGATTTCGAACCTCGAAACTATCAAGTTATGGTGTTCGAAGTGGCAATACGGAGGAACACCATTGCCATTCTTGACACTGGTGCCGGAAAGACCATGATTGCGGTAATGATGATTAAGAAGATCGGGACTGATCTTAGGTTGAAGCAGGACAAGGGATTGATCGTCTTTCTTGCACCCACTGTTCATCTTGTTACCCAGCAATACGAGGTGATCAAAATTCACACTGATCTCAATGTGGCTAGCTACTATGGTGAGAAGGGGATTGATCAATGGGATGAGAAAAATTGGAAGCAGGAAAAATCTATTTACCAAGTAATGGTGATGACACCTCAAATTTTATTGGATGCACTGAGGAGAGCTTTCTTATCAATGGATGTGGTGCGATTGTTGGTGTTTGATGAGTGCCATCGAGCTACTGGTAACCATCCTTATACTAAAATAATGAAGGAATTCTATCACAAATCTCAACTAAGGCCAACAATTTTTGGTATGACCGCATCTCCAATTGTAGGAAAAGGCGTTTCATCAGTTATCGAGTGTGAGGATCAGCTTTCTGAACTTGAAAGCATTTTAGATGCAAAGATATACACAGTCGCTGACAGGAATGAATTGGATGTATATATTCCTTTTGCAAGAGAAGTTAATATATATTATGGTCCTGAGTTGTGTGTTCATCATTCCTTAAAAATGAAGTTGGAACTGCTATTGAGTAAGTTTGATGAGGCAGTTATCTCACTGAGTAGATCTGGATTCCATCATTATAATGATATTGAAGACATTCTGAATAAATCCAGAACACGGTTGTCCAGTTGGCATGCAAAATTTTGCTACTGCCTTGATGAACTTGGACTGATTTGTGCCAGCGAGGCCATTAAAATATGTTCGGAGAAGATCCACCTTCCATACCCTGTAGAGTGTAAGAATTTTGCTTCAGAATGTTTAGCACAGTGCAAGTCTTATATTGAGCAATATAGGAATTTAGTTCTCGAATGCTTACCTCAAGATTTTGAAATTCTTTTAAGAGCTAAACAGTGTTATCCTGAAGCCAAGGAATTGGGTTATGTGTCTTTCAAGTTGAGCGAACTGATGATCATATTTCAATCGTTTGAAAGTTCCAGAGAAGTTCGATGCATAGTTTTTGTTGAAAGAAAAATTACAGCTAAAGTGCTAGGACGAATGATTAAGAATGCTAATATTTTCACAAAATTGAGAGTTTCTTACTTGACTGGAGGAGGTTCTTCAGTAGATGCACTGACCCAGAAATCACAAAAAGAGACGTTGAACTTATTTCGTCTTGGAGAGATTAATATATTGTTCACAACTGATGTTGCCGAAGAGGGGCTTCACATACCAGAATGCTCATGTGTCGTTCGCTTTGACCTGCCGAAAACAGTCCGTAGCTATGTTCAGTCACGAGGGAGAGCTCGACAAATTGATTCACAATACATTATTATGCTTGAAAGGGGAAATATTCAACAAAGGAACCAGTTATTTGAAATTGTGAGGGGTTGTCATTCAATGATGGATGTTTCTCTTAATCGAGATCAAGATGCTTTGATTCCAAAAGCACTCGGCTATGAAGAAATTAATACATATCATGTTGAGGCAACTGGAGCAACTGTGACTGCTGATGCAAGTGTTAGCCTTATCCATAAATATTGTGACAAGCTGCCTAAAGACAAATATTTTACTCCTCGACCAGCTTTCCAATTTGATGTTTGCGGTGGAACTTATGAATGTACAATAACATTACCTGCCAATGCTGCATTTAGGACATCAGTTGGCCCTTTTTGTAAAAATTCTCATCTTGCAAAACAGCAAGCTTGCTTAGAGGCTTGTAAGCGGCTGCATCAAGTTGGTGCATTGGATGATCATCTTAATCCTATAATTGTAGAGCCATTGAACTCTAAGCTTGATGAAAAAACAAGAGAAAATGCTGCCGGTATAGGCACAACAAAGAGAAAAGAACTCCATGGAACAATCAATGTACATGCGATATCAGGAACTTGGGCCCACCTGGAAACAGAGACTCTTACTTTACAGGGATACAAGATAAAGTTTGTGTGCAATCACATGAACTATAAATATTCTGGATTCATTTTGCTACTCGATGCCATTCTTGATGAAGATGTTGGCTGTTGGGATGTGGATCTTTATTTAATTGGTAAGATGGTGAAAGCGTCCATTTCACCATGTGGGCCCATTCTACTTGATAATCAGCAGATGAAGCGAGCAAAAGTATTTCAAGAACTATTTTTTAATGGATTATTTGGCAAATTATTTAGAGGATCCAGATCCTGTGGGTATAAGAGGGAATTTTTTCTAAAAAGTATTAACGGATCGAAGTGGAATAATTCCAATATGTACTTGCTTTTACCACTTAAAAGTTCAAACATGAAACATCATGATGAAGTTCACATAAACTGGGATGGAATTGATGCGGCATTTTCTGTTGTGGAATTCATGTCAGTGGTATACTCAATAGGATCATGGTGCGATTCACTCTGGAAATATCAAGTACCTTTTGTTTCGAGTCATGGTTTTGACGAGTTCAATATCATCCACTTTGCTGATAAGCATATGCATATTCAAAGTGTGAAAAACTTGGTAGTTATGGCTGTCCACACTGGCAAACTCTATTCAGTTGTTGATGCTGCAGTGGATTTAACTGCTGATAGCTTGTTCGATGCACCAGGATTTGCTACATTTAAGGAATATTTTACTAAAAAGTATGGAATTGTGCTTCGGCTACCTGGGCAACCATTATTACTTTTGAAGCCTAGTCATAATGCTTACAACTTGCTTTATCCATCTAGCCACAATGGAGATGGCTCAAATACAAATGTTAGCAGTAATGATGTAATTAAGTCACGAAATTATATTCGGATGCCACCAGAGCTACTTGTTCACATTGATGTACCCTTGGATGTTTTAAAATCTTTTTACTTGCTACCTTCCTTGATGTATCGATGGGAATCTCTGATTCGGGCCAGTCAATTAAGAAAAAAAATTGGTTACATTGCTACTGGTTCTTCTGTATCAAGTTCTTTGATTTTGGAAGCTATCACTACATTAAGATGCAGTGAAGAATTCTCCATGGAGCGTCTTGAACTTCTTGGGGATTCTGTACTGAAATATGCAGTGAGCTGCCATCTTTTTTTAAAATTCCCTGAGAAGCATGAAGGACAATTATCAGCTCACAGATCACAGTTAGTTTGTAATGCTACTCTTCATAATCTAGGTGTGAAACGGAATTTGCAGGGTTACATACGTGATGCTGCATTTGAGCCGCGTCGCTGGGTTGCTCCTGGTCAAGTCTCACTTCATCCTGTGCCATGTAACTGTGGAGTTGATTCTCTAGAGGTATCATTGGATGAACAGCATGTGTCCGAGGATAAAACTATTATTATTGGAAAGGCTTGCGATAGAGGGCATAGATGGATATGCTCCAAAACAATATCTGATTGTGTTGAGGCACTTATTGGAGCTTACTATGTTGGCGGTGGACTGAGTGCAGCCCTTGCTGTGCTGAATTGGTTTGGCATTGAAACAAATATGGAGTTGGAAATGGTGGAAGAAGCAGTAAAGCCTCTTTTGGTTAGGAGCCATTTACCCAAACAAGATGAGATTGAAATACTGGAAAAGAAGGTTGGGTATAAATTCAAATTGAAAGGCCTTTTACTGGAGGCCATAACTCATGCTTCCCAACTTGACTTAGGAGGCGGTTGTTGCTATCAGCGGCTTGAATTTCTTGGGGATTCGGTGTTGGACGTTTTGATTACTTGGCATCTGTTCCAGTGCCATGAAAATATTGATCCAGGAGAGTTAACTAGTTTGCGATCAGCTTCAGTTAACAATGACAACTTTGCTCAAGTTGCAGTAAAGCATAAGCTTCAAATGCATCTTCTACATGGTTCTGGATTGCTTTTTGAACAAATTACAGAATTTGTTAAACTGTATGAGGAATCTCGGAAGAATGAGCAGGACTCTAACCATATTAGCTCACTTAAGGCTCCCAAGGTCCTTGGGGACATGGTTGAGAGTATTGCTGCTGCTATTCTCATTGATACAAAGCTTGATCTTGATAAAGTATGGGGCATCTTTGAACCCCTGCTTTCTCCAATTGTAACACCTGCAAGCCTTGAATTGCCTCCTTTTCGAGAACTGTCAGAATTATGTAGCAGTTCTGGTTATTTCTTAAATGTTTCATGCATTGATGAGGAAGAAATGGTGATTGCTACGCTTAATATACAACTCAAGGATGCGCTGCTTGAGAGGCGAGCACGTGATAAGAACAGAAAAGCTGCCAAGGGACAGGCGGCTCTTTTGTTATTGAAAGACATGGAAGAAAAGGGTTTCTCGCATTCTCGACATGCTTCAAAGTGTGGACAACATGAAGGACAAGTTTGCAACTCAAAGCAGCTTGCGACACTTTTGGACACTGAGGCATCACTAACAAACTGTGAACCAACACAGTCGACACAGCTTACAAATAATATGGAAGTTGTGCTCCTTCTGAGTGACACTGAACCCAATTCATCAGTTGTGACTTTACAGGTCAAGCTTAAGAAGGGAGGACCTCGCACTGCATTATATGGCCTTTGCAAACGCTTCCATTGGCCAATTCCTACCTTTGACTCAGCAGTTGATAATAATAACAATTTAAGTGGTAATATGGGGAAGAAGGGGCCTCTTTCCTTCACTTCAAGCATCACAATGCATCTTCCGGGCTCCAGCGTTATCACGCTGAAGGGGGAGAGCAGATTGGATAAAAAGAGCTCTCAGGATTCAGCCGCGCTGGTTCTGCTCTATGAGATGGAAAAACTTGGAAAATGCAGAATACAAGAAGTGTGACGCCATCAACCCAAATATGGTACTGATTTTACGCCCTGATTATGCTCTATTTAGTCAATTTTCCTTTTATACGGCTTATATTTTCACTTTTAATTGAAACGTCAGCCATGTTATTTCAACTGTCTGTGCTCGGCATTGTGAACGAAGGTGGTGTAAATAAGCCGAACGTTAATGAGCTAAGGTCTTGATTGTTCCTATTTGCCATATTTATATTAAGTTAAATTGCTTAACCCGGTGCTGAA

Network for GWHGAAEX012327

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.28	DEAD	43	190	8.80E-16
PF00271.30	Helicase_C	406	511	3.70E-18
PF03368.13	Dicer_dimer	582	666	2.40E-25
PF02170.21	PAZ	900	1028	3.10E-12
PF00636.25	Ribonuclease_3	1070	1204	3.30E-26
PF00636.25	Ribonuclease_3	1282	1393	3.00E-19

Protein Sequence

>GWHPAAEX012327
METSPSKNLHKRPIESVDGEEAELKTDVKRQSKCSKDFEPRNYQVMVFEVAIRRNTIAILDTGAGKTMIAVMMIKKIGTDLRLKQDKGLIVFLAPTVHLVTQQYEVIKIHTDLNVASYYGEKGIDQWDEKNWKQEKSIYQVMVMTPQILLDALRRAFLSMDVVRLLVFDECHRATGNHPYTKIMKEFYHKSQLRPTIFGMTASPIVGKGVSSVIECEDQLSELESILDAKIYTVADRNELDVYIPFAREVNIYYGPELCVHHSLKMKLELLLSKFDEAVISLSRSGFHHYNDIEDILNKSRTRLSSWHAKFCYCLDELGLICASEAIKICSEKIHLPYPVECKNFASECLAQCKSYIEQYRNLVLECLPQDFEILLRAKQCYPEAKELGYVSFKLSELMIIFQSFESSREVRCIVFVERKITAKVLGRMIKNANIFTKLRVSYLTGGGSSVDALTQKSQKETLNLFRLGEINILFTTDVAEEGLHIPECSCVVRFDLPKTVRSYVQSRGRARQIDSQYIIMLERGNIQQRNQLFEIVRGCHSMMDVSLNRDQDALIPKALGYEEINTYHVEATGATVTADASVSLIHKYCDKLPKDKYFTPRPAFQFDVCGGTYECTITLPANAAFRTSVGPFCKNSHLAKQQACLEACKRLHQVGALDDHLNPIIVEPLNSKLDEKTRENAAGIGTTKRKELHGTINVHAISGTWAHLETETLTLQGYKIKFVCNHMNYKYSGFILLLDAILDEDVGCWDVDLYLIGKMVKASISPCGPILLDNQQMKRAKVFQELFFNGLFGKLFRGSRSCGYKREFFLKSINGSKWNNSNMYLLLPLKSSNMKHHDEVHINWDGIDAAFSVVEFMSVVYSIGSWCDSLWKYQVPFVSSHGFDEFNIIHFADKHMHIQSVKNLVVMAVHTGKLYSVVDAAVDLTADSLFDAPGFATFKEYFTKKYGIVLRLPGQPLLLLKPSHNAYNLLYPSSHNGDGSNTNVSSNDVIKSRNYIRMPPELLVHIDVPLDVLKSFYLLPSLMYRWESLIRASQLRKKIGYIATGSSVSSSLILEAITTLRCSEEFSMERLELLGDSVLKYAVSCHLFLKFPEKHEGQLSAHRSQLVCNATLHNLGVKRNLQGYIRDAAFEPRRWVAPGQVSLHPVPCNCGVDSLEVSLDEQHVSEDKTIIIGKACDRGHRWICSKTISDCVEALIGAYYVGGGLSAALAVLNWFGIETNMELEMVEEAVKPLLVRSHLPKQDEIEILEKKVGYKFKLKGLLLEAITHASQLDLGGGCCYQRLEFLGDSVLDVLITWHLFQCHENIDPGELTSLRSASVNNDNFAQVAVKHKLQMHLLHGSGLLFEQITEFVKLYEESRKNEQDSNHISSLKAPKVLGDMVESIAAAILIDTKLDLDKVWGIFEPLLSPIVTPASLELPPFRELSELCSSSGYFLNVSCIDEEEMVIATLNIQLKDALLERRARDKNRKAAKGQAALLLLKDMEEKGFSHSRHASKCGQHEGQVCNSKQLATLLDTEASLTNCEPTQSTQLTNNMEVVLLLSDTEPNSSVVTLQVKLKKGGPRTALYGLCKRFHWPIPTFDSAVDNNNNLSGNMGKKGPLSFTSSITMHLPGSSVITLKGESRLDKKSSQDSAALVLLYEMEKLGKCRIQEV

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006396	Biological Process	RNA processing
GO:0016891	Molecular Function	endoribonuclease activity, producing 5'-phosphomonoesters
GO:0004525	Molecular Function	ribonuclease III activity
GO:0005524	Molecular Function	ATP binding
GO:0005515	Molecular Function	protein binding
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.960
SRP064423	SRR2545915	Juvenile tuber	7.310
SRP108465	SRR5643513	five period of Gastrodia elata	6.490
	SRR5643514	five period of Gastrodia elata	7.200
	SRR5643515	five period of Gastrodia elata	6.010
	SRR5643524	five period of Gastrodia elata	7.850
	SRR5643525	five period of Gastrodia elata	3.260
	SRR5643528	five period of Gastrodia elata	1.970
	SRR5643658	five period of Gastrodia elata	3.070
	SRR5643659	five period of Gastrodia elata	6.360
	SRR5643660	five period of Gastrodia elata	6.080
	SRR5643661	five period of Gastrodia elata	6.380
	SRR5643662	five period of Gastrodia elata	5.790
	SRR5643663	five period of Gastrodia elata	7.060
	SRR5643664	five period of Gastrodia elata	6.420
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.570
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.260
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.580
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.260
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.770
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	7.710
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.200
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.580
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.330
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.300
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.520
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.520
SRP279888	Gastro	Gastrodia elata tuber	6.53
	Juven	Juvenile tuber	11.74
	Mother_Gastro	Mother tuber of Gastrodia elata	3.98
	Mother_Juven	Mother tuber of Juvenile	7.46