Gene detail

Detail information of GWHGAAEX012328/evm.TU.scaffold_42.139

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|108803785\|ref\|YP_643722.1\|	4.00E-25	serine/threonine protein kinase [Rubrobacter xylanophilus DSM 9941]
KOG	KOG0605	0	NDR and related serine/threonine kinases
nr	gi\|672171469\|ref\|XP_008805805.1\|	0	PREDICTED: serine/threonine-protein kinase 38-like [Phoenix dactylifera]
Swissprot	tr\|Q9LE81\|IRE_ARATH	2.00E-77	Probable serine/threonine protein kinase IRE {ECO:0000305}
trEMBL	tr\|M0TFX8\|M0TFX8_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P08900_001}
TAIR	AT4G33080	0	AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000050	3695174	3736356	+

Transcript Sequence
>GWHTAAEX012328 CGGGCCACGAGGCCAAAAGCATGTACATAACTGTACAAGTTTGTGAGTGGTGGAAAAAATTCTTACAGGAAGACGGTCCGACTGTCCGCTGTTCCATCCGCTGCCTTGCTGCCATGAATCTGACCTCGTCGCTTACAGCCTAGAATGTCTGTACATGAGCTCGCAATAACAGAGACAAATAAATAAAGAGGAAGAACAGAGATTCAGAGAAAGAAGAAGAAGAAAGCAGAGAAATTCATAAAGAGAGAGAGAGAGAGAGAGGTATAGACGTTAGGGAGGGATAACTCAGAGCGGGCAAACAGGGAGGGATGGAGAATGAGATGAAGGACGCTGATGACGAACGTGAAAACAGAAGGGAAGCTGCAGAGGAGGAAGAGGAGGAAACAACGGGTTCAAAGCTAACATTGGAGAGGGTGGCCGCCGCGAAGCAGTTCATAGAGAACCATTACAAGGCGCACATGAAGAATATGCAGGAGCGGAAGCAAAGGCGATGGGTCCTTGAGAGGAAGTTAGCTAATTCTCAAGTTTCACAGGAAGAGCAAATGAAAATAATAAAAGATCTAGAACGGAAGGAAACACAATACATGCGACTTAAAAGACACAAGATTTGTGTTGATGATTTTGATTTACTAACCATCATAGGAAGAGGAGCGTTCGGAGAGGTTAGACTTTGCCGTGAGAAGTCCACAGGTAATATTTATGCAATGAAGAAGCTTAAGAAGGCTGAAATGCTTAGCAGGGGTCAGGTTGAACATGTTAGAGCTGAAAGAAATCTTCTTGCTGAAGTTGCAAGCCATTGTATTGTCAAGCTATACTACTCATTTCAAGATGCTGATTATCTGTATCTTATCATGGAATATCTTCCTGGTGGTGATATGATGACTCTACTAATAAGAGAGGACACCTTAACTGAAAATATTGCTAGATTCTACATTGCCCAAAGCGTTTTGGCAATAGAGTCCATTCATAAACATAACTACATTCACAGAGATATCAAACCTGACAATCTTCTGCTAGATAAAAATGGACACATGAAGCTGTCCGATTTTGGCCTGTGCAAGCCAATTGACTGTAGAACTCTTTCTACTTTGAATGAAAATGAGCCTATAAGTGATGAAAACCTTAGGGAGTCCATGGACATTGATGGCGCTTTTCCAGACACAGCCACTGGTGGCAGATGGAAAAGCCCCCATGAACAGCTACAGCACTGGCAAATAAATCGGAGAAAATTGGCGTTCTCTACTGTAGGCACCCCTGACTATATTGCCCCAGAGGTGTTACTAAAGAAGGGATATGGCATGGAATGTGACTGGTGGTCATTGGGTGCTATAATGTATGAGATGCTTATTGGTTATCCCCCGTTCTATTCGGATGATCCAATAACAACTTGTCGGAAGATTGTGCACTGGAGAAATCATGTGAATTTTCCTGAGGATGCAAAAATTTCACCTGAGGCGAAAGATCTTATCTCTAGATTGCTTTGTGATGTTGAACACAGGATTGGAAGTCGAGGAACGGACCAAATAAAGGCTCACCCATGGTTTAAAGGTGTAGAATGGGATAAACTATATGAGATGGATGCTGCATTTAAGCCTGAGGTTAACAACGAACTAGACACTCGGAACTTCTTGAAGTTTGATGAATTGGATCCTCCTCCAGTAAGAACAAGTTCTGGAACTTCAAGGAAGATGCTTCTAACTCCAAAAGATTTAAGTTTTGTGGGGTATACCTACAAAAACTTTGAGGCTGTCAAAGGCGTTAATCAACCCAAAGATATTAAGAGAAGAAATACATCCCCGAAACAACACTCCATCGATTCCATCTTCGGCGGCAATTCTTTGTCGGAATCCAAAGAATCATCTGACGGCTCAACAGATAGGAAGATGATTTAATCTGGAGATTCCATGTCTCCTTAAATGATTTGATTGATTGTTCCTCCAAAGCTCCATGCATGGTTTTTTTGGGACTGACCTTTCTTGTTTTTGTGAGGTCCCATAATAAGGCTACCTAAGCTGCCTTTTTGTAGTACTGTTTTCAGTTTCTATAGGTGTATAGTATTTTGTATTTAAGGATGACAAGATAAAAAAAAAAGAATGGCTTTTGGTTCTTTATTTATGTCTGTGGAGAGTTATTATTGTAAACTGAATTGACTGCCCAGGTTGGCAAGGGGGCCACACTACAACTTTGCTTTCTCTTGTGGCAGTTTAGGTCTTGATTTTTTTGTGGAACAATAAATTGATTTTTACTATTTTGATTTTTGTCAACTAATAATTTACTTTTATACCATTTGATCCTGCCTTGTATGAGATCTTATATTATCATCAATAAGAAGTTCAATGGAATGGT

Network for GWHGAAEX012328

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	107	254	5.10E-43
PF00069.24	Pkinase	305	412	1.10E-20

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	AGC_NDR

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding
GO:0004674	Molecular Function	protein serine/threonine kinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.670
SRP064423	SRR2545915	Juvenile tuber	2.460
SRP108465	SRR5643513	five period of Gastrodia elata	6.130
	SRR5643514	five period of Gastrodia elata	5.410
	SRR5643515	five period of Gastrodia elata	6.490
	SRR5643524	five period of Gastrodia elata	5.700
	SRR5643525	five period of Gastrodia elata	25.760
	SRR5643528	five period of Gastrodia elata	15.990
	SRR5643658	five period of Gastrodia elata	22.520
	SRR5643659	five period of Gastrodia elata	5.380
	SRR5643660	five period of Gastrodia elata	5.200
	SRR5643661	five period of Gastrodia elata	5.450
	SRR5643662	five period of Gastrodia elata	4.710
	SRR5643663	five period of Gastrodia elata	6.050
	SRR5643664	five period of Gastrodia elata	4.610
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.090
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.840
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.690
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.420
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.710
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.080
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.670
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.570
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.040
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.280
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.430
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.430
SRP279888	Gastro	Gastrodia elata tuber	5.66
	Juven	Juvenile tuber	5.73
	Mother_Gastro	Mother tuber of Gastrodia elata	6.05
	Mother_Juven	Mother tuber of Juvenile	5.12