Gene detail

Detail information of GWHGAAEX012331/evm.TU.scaffold_42.142

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|209364023\|ref\|YP_001424629.2\|	7.00E-06	glycine-rich RNA-binding protein [Coxiella burnetii Dugway 5J108-111]
KOG	KOG0117	4.00E-127	Heterogeneous nuclear ribonucleoprotein R (RRM superfamily)
nr	gi\|672112885\|ref\|XP_008808113.1\|	1.14E-173	PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q05196\|PABP5_ARATH	2.00E-15	Polyadenylate-binding protein 5
trEMBL	tr\|M0S682\|M0S682_MUSAM	8.00E-162	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P08410_001}
TAIR	AT3G52660	4.00E-127	RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000050	3740518	3756473	+

Transcript Sequence
>GWHTAAEX012331 GGCGAGTTTGACTTGTTGCTGGCCTATGGGCTTTGGCCAGAGACTAGAAACGTTGCGCCGGGTTTAGGGTTTACGTCTTTTCTTTATCGTAAACTATGTCCATTTGATCATGTATTCTTAAATCCTGATCGTCCAAATCACGCCTCCAAAATCTGATTCTCAGCCGCTCCGCAGCCTTCGCTTCTCAGTTCGCCGCACCTCTCTCCAATCCTCTTCAGAGAAATCTTCAGTGGACAGCTTCTTCCATAGTCCAGCGGCTTTTGTTGGTGGTTGCATTTCTTTCCTCTTCATATTTTTCAGCCTTGCTTCTACAAATATTACTGGCATTTGTCTCCTTCACGGCTTCTTTCCAAATTTATTTGAGATAGCTTAAAATGCCAAGGGCAGGAACTAGTGCTCAAGCTACCAAGCTTCCTGAAGCTCAAGTGCCTCAACAGAATTTGGTTGTCGAATCTGAAGAGGATGTCGGAGATGAGGAGATTGAGTATGAGGAGGTTGAAGAGGAGGTTGAAGAAGAGGAAGAAATAGAAGAGGAAGTGGAGGAAGAAGATGGTGAAGGTGAGGAGACAGCAGTTGCCAATGCTGTTGACGCTAATGCAGTTACTGCCCATGATGCTGATATGAAGGATGATGAGGAGAATGAACATAAAAAGCACGATGAGCTACTTGCTCTTCCTCAACATGGTTCTGAGGTTTATGTTGGTGGCATACCGCATGGTGTTTCTACTGAAGATCTGAAAAGCTTTTGTGAGACAGCTGGTGAAGTTTTGGATGTTCGGATTATATCAGGGAAGGACAAAGTATATGCTTTTGTAACATTCAGAACGAAGGAGATGGCTAAAAATGCAATTGAGACTCTTAAAAACAAGGATTTGAAGGGTAAAAAGGTCAAACTTTCAACATCTCAAGCAAAGAATAGACTCTTTATTGGTAATGTTCCCAGACACTGGGTTGAAGATGATCTGAAGAATGTAGTGTCAAAACTTGGGCCTGGTGTAACTGGTGTGCAACTAATAAAGGATCCACAAACTCCTAGTCGCAATAGAGGATTTGCATTTATTGAATACCACAACCATGAATGTGCTGACTATTCTAGAAAGAAAATGTCAAACCCAGGATTCAAATTGGATTCCAATGCTGTTACAGTGAATTGGGCTGACCCAAAAAGTGGAGATTCTGGTTTATCTGCACAGATTAAGGCAATATATGTGAAAAATTTACCCAAGAATGTGACCGAAGGTCAGCTGAAAAAGCTATTTGAACGGCACGGGGAAATCACTAAAGTTGCTCTGCCTCATGTAAAATCTGGAGTGAAGAATAAAATTGGTTTTGTGCATTTTGCTGAGAGATCATATGCCATGAAGGCACTTCAGAACTCTGAGATATATGAACTTGATGGGCATGTTCTCGAGTGTTCCATTGCAAAACCTCCTGCTGATAAGAATGTGGCAACTGTAACTGATGTAAGAAAAGGTTCTTTGCTTCCAAATTATCAACTTCAACCAGGTTTGCTGGGAGGTGGCTATGGTGCTTTGCCTGCTGGTTTTGCTCAGCCTATGGCTTATGGAGGAGGCACTTCTGGTGTAGCAATGGTTCCAATGGTGCTGCCAGATGGCCGCGTTGGATATGTTGTGCAGCAGCCCGGCGTTCCTGTAGCATCTCTCCAGAGCAGCATTGGCAGAGATGGGAATCCCGGAAACAATGCGGGCCGCGGCGGGCTTCGATACCGTCCTTATTGATCTCTTTCTTCTCTCTCTTGAACGAAGCTGCCGTATTTGTTGCGACTTTCTATTGTTTTTTATTTCTGATGTTTCTGAAAGCAAATTCGGGTTACTAAACAACTTTGGCATTGTGGGATTGATAGGCAAGTTTAATGAGATCCATTGCTTTTAGTCTGAAGCACACATATATATGTATGTATCCAGCATTCTAAATGCATGTTATATAAAATTTTAAATAAATACGTTATATTTATTAAATTTAACTTTACCTGAGAATTACAAACAAAGTATTTTTATACATATTTTTTAGGGCACGTCACTTATTTCCATTTCTGTTTAGAAACGCAGTTCCAAAAGAACTTTTTAGTAACAATTTTAAAAAAATACAAATATTTTTATCTAATCAA

Network for GWHGAAEX012331

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module8

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.21	RRM_1	107	173	1.20E-15
PF00076.21	RRM_1	183	246	4.00E-10
PF00076.21	RRM_1	277	345	1.50E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	164.860
SRP064423	SRR2545915	Juvenile tuber	130.700
SRP108465	SRR5643513	five period of Gastrodia elata	37.620
	SRR5643514	five period of Gastrodia elata	38.260
	SRR5643515	five period of Gastrodia elata	33.170
	SRR5643524	five period of Gastrodia elata	34.500
	SRR5643525	five period of Gastrodia elata	41.190
	SRR5643528	five period of Gastrodia elata	32.310
	SRR5643658	five period of Gastrodia elata	46.740
	SRR5643659	five period of Gastrodia elata	39.600
	SRR5643660	five period of Gastrodia elata	43.580
	SRR5643661	five period of Gastrodia elata	37.150
	SRR5643662	five period of Gastrodia elata	43.780
	SRR5643663	five period of Gastrodia elata	42.470
	SRR5643664	five period of Gastrodia elata	49.480
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	66.660
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	38.760
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	65.210
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	82.030
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	71.010
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	84.020
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	77.330
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	76.520
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	52.240
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	64.950
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	50.380
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	50.380
SRP279888	Gastro	Gastrodia elata tuber	54.37
	Juven	Juvenile tuber	41.61
	Mother_Gastro	Mother tuber of Gastrodia elata	25.48
	Mother_Juven	Mother tuber of Juvenile	26.79