Gene detail

Detail information of GWHGAAEX012334/evm.TU.scaffold_42.145

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|332285242\|ref\|YP_004417153.1\|	4.00E-91	ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
KOG	KOG0331	0	ATP-dependent RNA helicase
nr	gi\|695067069\|ref\|XP_009380443.1\|	0	PREDICTED: DEAD-box ATP-dependent RNA helicase 20 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q5QMN3\|RH20_ORYSJ	0	DEAD-box ATP-dependent RNA helicase 20
trEMBL	tr\|M0RK43\|M0RK43_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P21180_001}
trEMBL	tr\|M0RK43\|M0RK43_MUSAM	4.00E-56	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P21180_001}
TAIR	AT1G55150	0	DEA(D/H)-box RNA helicase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000050	3784159	3846043	+

Transcript Sequence
>GWHTAAEX012334 ATGAGCCGCTACGACGGCCGTCCCGGCGATCCGACCTCTTACCGTGACAGGAGAAGCGATGTCGGCTATAGCGGGAACGACGGCGGCTTTTCTAATTATGGAAAGAGCTACAAGCCCTCTGGTGCGAAAGAGACGGATGGAGTAGGGGATTTGGATGGCGTGGTGCCGTTCGAGAAGAACTTTTATAAGGAGTCTTCTTCAGTAGCTTCGATGACAGAGGCTGAGGTGGAGGAGTATCGCCGGAAGAGGGAGATCACTGTGGAGGGCAGGGATGTTCCGAGGCCTACTAGGGATTTTCGGGACGTTTGCTTTCCTGATTATGTGATGCAAGAAATTCATAAAGCTGGGTTCGTTGAACCTACTCCCATTCAAGCACAAGGTTGGCCAATGGCCATGAAGGGTCGTGACCTTATTGGTATTGCTGAAACAGGATCAGGAAAGACACTGGCTTATCTATTGCCTGCCATTATTCATGTGAATGCTCAACCAATTTTAGCACCTAATGATGGTCCAATTGTCTTGGTCCTAGCACCAACTCGTGAACTTGCTGTCCAGATACAACAAGAGGCAACTAAATTTGGAGCATCATCGAAGATAAAAAATACATGCATATATGGTGGTGTCCCAAAAGGCCCCCAGGTTCGAGACCTTCAAAAAGGTGTTGAAATTGTTATTGCCACACCAGGCCGGTTGATTGATATGTTAGAGTCACATCATACTAACTTAAGAAGGGTGACCTACCTTGTGTTGGACGAGGCAGATCGGATGCTGGATATGGGGTTTGAACCACAGATTAGGAAGATTGTTGCTCAGATTCGCCCTGACCGCCAAACTCTTTATTGGAGTGCCACGTGGCCCAAGGAAGTTGAGCAGCTCGCAAGACAGTTCCTCTACAATCCGTACAAGGTGACTATCGGCTCCGCAGACTTGAAAGCTAATCATGCAATTCGCCAGCACGTTGAGATCATGACCGAGAGTCAGAAATATAACAAATTGGTGAAGCTGCTGGAGGATATCATGGATGGAAGCCGGATATTGATATTCCTTGACACCAAGAAGGGCTGCGACCAGATAACGAGGCAGCTGCGGACAGACGGCTGGCCTGCTCTCTCCATCCATGGGGACAAGAGCCAGGCTGAGAGGGATTGGGTGCTGTCGGAATTCAAGGCCGGGAAAAGCCCGATTATGACGGCCACCGATGTCGCTGCTCGTGGTTTGGATGTGAAGGATGTCAAATACGTAATAAACTACGACTTTCCTGGATCTTTGGAGGATTATGTACATCGGATAGGCCGGACGGGCAGAGCCGGGTCCAAAGGAACAGCCTACACCTTCTTCACTGCAGCGAATGCCAGGTTCGCAAAAGATCTCATTGCCATACTGCAGGAGGCTGGCCAGAAGTGCAAAATCATGCAGTTGTGGTCTTCCTTACTTCTCATTCTTCCATCAACAATGCATTTACTTATAACAATCGTTCTCTCTTTAGTTGCTGCTGCAATCTTTTCTTCTCATAATCATGGAGTGAATAATATTTGTAATCCAAGTTATAGTAAGTGCGGCCAAAATCAATTCATCTACAATACTAATAAAAATTTTGTAAGAATACTTAAGAAAAGAACCAAATTAAGCCCTTGCTCCCCCTTTCTTCTGCGAAGAAAGGATCGGTACTTGCACTCGCCGCCTCCTCTCACTTACTCTCAATCTAGTTCCATAGCGATTCCTTTTGTCCGATCGGCAGACATGGCAGGACTCGCACCAGAAGGATCTCAATATGATGCCCGGCATTATGATGCAAAAATGAATGAGTTGCTTGATGGACAGGATTTTTTCACATCATATGATGAGGCTTATGAGAGTTTTGATTTAATGGGTCTGCAGGAGAACCTCTTGAGAGGAATTTATGCTTATGGCTTTGAAAAACCCTCTACAATTCAGCAGAGAGGTATTGTCCCATTCTGCAAGGGGCTTGACGTGATACAGCAAGCTCAATCCGGGACAGGAAAGACGGCGACTTTTTGTTCTGGGATTCTGCAGCAGCTCGATTATGGCCTGGTGGAATGCCAAGCCCTCGTGCTTGCCCCAACGCGAGAATTAGCGCAGCAGATCGAAAAGGTTATGCGCGCACTTGGAGATTACCTTGGTGTGAAAGTTCATGCTTGTGTTGGAGGAACCAGCGTTCGCGAGGACCAGAGGATTCTCTCCAGCGGAGTCCACGTGGTCGTTGGGACGCCTGGCCGGGTGTTCGACATGCTGCGGAGGCAGTCGCTTCGCCCTGATTCTATCAGGATATTTGTGCTGGACGAGGCTGATGAAATGCTTTCGCGAGGTTTCAAGGACCAGATCTATGACATTTTCCAGCTTCTCCCATCGAAAGTTCAAGTTGGGGTTTTCTCGGCAACAATGCCCCCCGAGGCTCTAGAGATCACCCGGAAGTTCATGAACAAGCCGGTGAGGATTCTCGTGAAGCGAGATGAGCTTACCCTGGAAGGAATAAAACAGTTTTTTGTGAACGTGGACAAGGAAGAAAATAAGCTTGACACACTCTGCGATCTCTACGAAACCCTAGCCATCACCCAGAGCGTGATTTTCGTGAACACCCGACGCAAGGTTGATTGGCTCACGGACAAGATGAGGAGCAGTGATCACACGGTCTCGGCGACCCATGGGGATATGGACCAAAACACTAGGGACATCATCATGCGCGAATTCCGTTCTGGCTCTTCTCGCGTCCTCATCACCACTGACCTGCTCGCCCGCGGGATCGACGTCCAGCAGGTCTCGCTGGTCATCAACTACGACCTGCCGACCCAGCCTGAGAACTATCTGCACCGCATAGGGCGGAGCGGGCGGTTTGGGAGAAAGGGCGTGGCCATCAATTTCATCTCCACCGAAGATTTCAGAATGCTGGCTGACATCCAGAGGTTCTACAATGTCACGATTCAGGAACTGCCGAACAACGTGGCCGATCTCCTGTGACCAGTTTTCGCTCTTGGAAACTGGTTCGGTATATTATGCTTGCATGCTCTAGGCCTTTTTTCTTTCATAATTTAATTTAATAAGCTTTTGAACTACTTTGCCTGTGTTGAAGAATGATGTAAGATTTGGGGTTTATGAGTTTCTGAATGCTGTTGTTGGTAGCCTGAAAAGCAATGGCGGTTAAATCTTTCGCTTATATTATGACAAATTTTGTAGCTTGTGAATGGGATGGCATCCAGGATGGTATTTTTGTTTATGTTGGAATTTGATTTTTTACGAGTGATGCTTATTTATTTTATTTTATTTGTCTTGCTTGAGGAGGAGGCTTTTCATATAGTTGAAGATTCTGTAGTGTCATCATTTCTGCTGTTTTTATTGTGTTCTATCTGCAGCTCTTTT

Network for GWHGAAEX012334

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.28	DEAD	121	292	1.80E-49
PF00271.30	Helicase_C	328	437	9.80E-30
PF00270.28	DEAD	643	804	1.90E-39
PF00271.30	Helicase_C	844	952	3.30E-28

Protein Sequence

>GWHPAAEX012334
MSRYDGRPGDPTSYRDRRSDVGYSGNDGGFSNYGKSYKPSGAKETDGVGDLDGVVPFEKNFYKESSSVASMTEAEVEEYRRKREITVEGRDVPRPTRDFRDVCFPDYVMQEIHKAGFVEPTPIQAQGWPMAMKGRDLIGIAETGSGKTLAYLLPAIIHVNAQPILAPNDGPIVLVLAPTRELAVQIQQEATKFGASSKIKNTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTLYWSATWPKEVEQLARQFLYNPYKVTIGSADLKANHAIRQHVEIMTESQKYNKLVKLLEDIMDGSRILIFLDTKKGCDQITRQLRTDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGSKGTAYTFFTAANARFAKDLIAILQEAGQKCKIMQLWSSLLLILPSTMHLLITIVLSLVAAAIFSSHNHGVNNICNPSYSKCGQNQFIYNTNKNFVRILKKRTKLSPCSPFLLRRKDRYLHSPPPLTYSQSSSIAIPFVRSADMAGLAPEGSQYDARHYDAKMNELLDGQDFFTSYDEAYESFDLMGLQENLLRGIYAYGFEKPSTIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDSIRIFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFFVNVDKEENKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSSDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFISTEDFRMLADIQRFYNVTIQELPNNVADLL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12823	DDX5, DBP2	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	138.800
SRP064423	SRR2545915	Juvenile tuber	183.620
SRP108465	SRR5643513	five period of Gastrodia elata	176.040
	SRR5643514	five period of Gastrodia elata	187.870
	SRR5643515	five period of Gastrodia elata	169.690
	SRR5643524	five period of Gastrodia elata	181.230
	SRR5643525	five period of Gastrodia elata	150.800
	SRR5643528	five period of Gastrodia elata	162.760
	SRR5643658	five period of Gastrodia elata	155.030
	SRR5643659	five period of Gastrodia elata	217.510
	SRR5643660	five period of Gastrodia elata	216.010
	SRR5643661	five period of Gastrodia elata	233.700
	SRR5643662	five period of Gastrodia elata	242.600
	SRR5643663	five period of Gastrodia elata	233.370
	SRR5643664	five period of Gastrodia elata	260.980
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	245.410
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	180.510
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	238.370
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	247.680
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	251.770
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	253.970
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	245.360
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	238.440
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	271.560
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	256.520
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	267.840
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	267.840
SRP279888	Gastro	Gastrodia elata tuber	221.96
	Juven	Juvenile tuber	231.94
	Mother_Gastro	Mother tuber of Gastrodia elata	110.50
	Mother_Juven	Mother tuber of Juvenile	144.26