Detail information of GWHGAAEX012335/evm.TU.scaffold_42.147
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|338213859|ref|YP_004657914.1| | 5.00E-43 | polyamine oxidase [Runella slithyformis DSM 19594] |
| KOG | KOG0685 | 8.00E-145 | Flavin-containing amine oxidase |
| nr | gi|743755337|ref|XP_010905443.1| | 5.14E-170 | PREDICTED: probable polyamine oxidase 5 [Elaeis guineensis] |
| Swissprot | tr|Q9SU79|PAO5_ARATH | 2.00E-145 | Probable polyamine oxidase 5 |
| trEMBL | tr|M0SJP9|M0SJP9_MUSAM | 2.00E-155 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P32350_001} |
| TAIR | AT4G29720 | 8.00E-145 | polyamine oxidase 5 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000050 | 3874758 | 3876940 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012335
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01593.23 | Amino_oxidase | 18 | 476 | 1.90E-68 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12259 | SMOX, PAO5 | Metabolic pathways | map01100 |
| Arginine and proline metabolism | map00330 | ||
| beta-Alanine metabolism | map00410 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.360 |
| SRR2545915 | Juvenile tuber | 6.970 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 23.030 |
| SRR5643514 | five period of Gastrodia elata | 17.020 | |
| SRR5643515 | five period of Gastrodia elata | 9.920 | |
| SRR5643524 | five period of Gastrodia elata | 13.380 | |
| SRR5643525 | five period of Gastrodia elata | 2.940 | |
| SRR5643528 | five period of Gastrodia elata | 2.520 | |
| SRR5643658 | five period of Gastrodia elata | 3.170 | |
| SRR5643659 | five period of Gastrodia elata | 62.860 | |
| SRR5643660 | five period of Gastrodia elata | 32.030 | |
| SRR5643661 | five period of Gastrodia elata | 50.600 | |
| SRR5643662 | five period of Gastrodia elata | 22.720 | |
| SRR5643663 | five period of Gastrodia elata | 23.210 | |
| SRR5643664 | five period of Gastrodia elata | 14.760 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.700 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 21.030 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 29.720 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.490 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.890 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.110 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 20.360 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.280 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 40.030 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 28.540 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 28.490 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 28.490 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.16 |
| Juven | Juvenile tuber | 46.87 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.94 | |
| Mother_Juven | Mother tuber of Juvenile | 8.49 |