Gene detail

Detail information of GWHGAAEX012337/evm.TU.scaffold_42.149

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|317133044\|ref\|YP_004092358.1\|	2.00E-23	serine/threonine protein kinase with PASTA sensor(s) [Ethanoligenens harbinense YUAN-3]
KOG	KOG1187	4.00E-149	Serine/threonine protein kinase
nr	gi\|743797476\|ref\|XP_010924992.1\|	0	PREDICTED: receptor-like serine/threonine-protein kinase ALE2 [Elaeis guineensis]
Swissprot	tr\|Q8RWW0\|ALE2_ARATH	0	Receptor-like serine/threonine-protein kinase ALE2 (Precursor)
trEMBL	tr\|W9QJQ1\|W9QJQ1_9ROSA	0	Receptor-like serine/threonine-protein kinase {ECO:0000313\|EMBL:EXB38845.1}
TAIR	AT2G20300	4.00E-149	Protein kinase superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000050	3965220	3995039	+

Transcript Sequence
>GWHTAAEX012337 CTTTCTGTTTAAAAGAACCTCTGCATATGTTCTCAGTAATTACGAAAGAAAAAAACTAACTTTTACTCGCAATTTGGGGAGCAGAAACAGTTCTTGCCATTGATTAGTCTATAAGAAACTCCCCCCTTTTCACCCACCCTTCTGTTACCTTTCCGCTGGCCCTATTTCTCATGGTGGTATCCGATGAAATCTCCCATTTTAAGTGCATGGGTTTCCTCTTTCTTCTCATGTGGCCTCTCCCGGTTCTTGTTTTTACTAAAAGTGCGGTTATCTGAAGCCTGCGTGGGAATGAGTGTTTTTCCAGTCATTTAGGATGGAGCAGAGAGGAATGGATATCCCCCGACGCGCATTTCAATGTTTGGTTTTTCTTTTGGGGATTTTCAGGACTCGAGGTTCTGTTCCGAATCCTCAAACCATGATACCGCAAAGTCCCAAGGCATTCGCACCTATCAATCATGCTTCAGCACCATTTTTACCCAGTTCTCCACCAACTTTTGCTGCAAAGGAGCATAAAATGCTCGGCTCTGCCATTCCTCCCCAAAGAAGTCAAGTACTAAATACTTTTCATAATTTGTGCCATGATCTCGCTTCTTCAATTGTTATTACTCCATCAACACTAGTCAGATGTGGAACCCCTGTAGGCGAAGTTCAGGGAAAACCTTCTAATGGTGCTCCATTAACATTGCCTCATGCTGCAGCTCCATCTCCAAGTGTATTTCCTCTTATTCCACAAGACGTACCTCCAACTGTTCCAAGAATAGCCCCATCAACCGTCCGCATGCCTGGTGCAAAAACCTTCAATGGGCCTATGATGCCCCCCATGATTGCACCTACCAACAATTCCCACTTCAATGATTCATTCCCTATTCTTAGTCCTATGCCACGTGATTCAAATAATACCCGTACTCCTTCAGTCTCACATCCCCTTCCTCCTGAAGGAAGAATAGCACAGAGTCCTCAGCCTGCAGGAAAATTTTCAGTTCCTGGGCATAAAGATGGGAAAATAGAAGGAATTCCAGCGTCAGCTCCATTTTCTGTGTCTCCATCATCAGCAACTTCAGGTTCTCTACATTCTCCTCCACCATTACATCAACATGTACGTATTCCCAAGTTCAAGAGGGATCCTATACTTAAACATGTGGTCTCTCCTGCACCTTTGCCCTACTTTGGGAGACCTGTGTTCTCTCTAGCTCCTGTAAATCATTCTCCATCTGAAGTTCCAAAGAATGCCAGAAGAAATATTGCTCCTTGGCATAATGCCGAAGGCCCAGAGGCCAATCCTGCTCCACTGCCTCAGCCACCAATGCTGAATAATAAGAATAAGCCTTATGCTCCTTCACCTAGTGCTGAAGGTTCCTTTGTCAACCACGCTCCTATGCATCCTCACATAGAGATTTCAAAAAAACCTTACTTCCCACCAGACCAGGCTCCAAGTAGCGGGAAATCTGCTACTCCTGTTTCTTCACCTACCACTCCCCATACACATAACAGATGGCCAATTTATTATCCAGCACCTTCTCCTAGGTCTCAGCCACCTTTGCCTCAACCCATTCTGTTATTACCCCCTCCACCGCCTAATTTAAGGTGTGGTCCTATAATGTGCCAAGAACCGCTTGTAAATCCCCTTCCAGGGTCACCGTGTACATGTGTCATGCCAATTAAAGTTGGACTTCGTCTTAGTGTTGCATTGTATACATTTTTCCCCTTGGTTTCGAAATTTGCTCAAGAAATTGCATCAGGAATTTTTGTGAAACAAAGTCAAGTACGCATCATGGGAGCGAATGCTGCTTCTGAGGACACTGAGAAGACTATTGTCCTCATTGATCTTGTTCCTCTTGGAAGGTACTTTGACAAGACAACCGTGTTCCTAAGCTATGAAAAATTCTGGCATAAGCAGGTTAAGATACAGGTTTCGTATTTTGGAGACTATGACGTATTGTATGTTCTGTATCCAGGTCTTCCTCCATCGCCACCTGTTCCACCGGCATATATTATTTCTGAAGGGAAAGGATATGGCAGTGACAATAATGCTAGGGGAATTCGACCTCTTGGAGTTGATGTGAGAAAGCAGAAGAGAATAGTGAAATTGAGTGGAAGCCTAATAACCATTATTTTTCTATCAGCGGTAATATTGTTGGTTTTGATTTTTGGAGCTGTTTGGTTTTTATTGTCAAGGAACTGGAAGCATTCAGATTTGCCTGCTTCAAGGTCTCAATCATTACATACTCCCTCCTCAAAATTTGCAGTAGCTGCTAGAGCTGCACCTATTCCCACTGGAACTAGGCCAAACTCTGCATCAATCTCCTTCAACTCAAGTATCGCGACATACACAGGATCAACGAAGGGCTTCAGTTTGGCCGACATAGAAAATATGACAAATAAGTTTGACGATTTGAGAATCATTGGAGAAGGAGGCTTTGGACGAGTATACAAAGGAACTCTTGTAGATGGGATGAAGGTGGCTGTAAAGGCTCTAAAGAGAGATGACAAGCAAGGAGAAAGGGAGTTCTTGGCCGAAGTGGAGATGCTCGGTCGTCTGCATCACAGGAACCTTGTCAAGTTGATAGGCATATGCGCCGAAGAAAATACTCGCTGTCTCATCTATGAACTCATACCAAATGGAAGCGTGGAATCGCATCTACATGGTGCGGACAAGGATATCTCGCCTCTTGACTGGAATGCACGGATGAAGATCGCCCTGGGCGCAGCTCGGGGTTTAGCTTATCTTCACGAAGATTCGAGTCCCCGTGTCATTCATCGTGACTTCAAATCTAGCAACATCTTACTTGAGCATGATAACACGCCCAAGGTTTCCGATTTTGGCCTCGCCAGGGAAGCTATGGATGAACAAAATGAGCACATCTCAACCAGAGTTATGGGAACTTTTGGCTACGTGGCTCCCGAGTACGCAATGACGGGGCATCTTCTGGTCAAGAGCGATGTTTATAGCTACGGAGTTGTTCTTCTAGAGCTTCTAACGGGAAGGAAGCCTGTTGACATGCTGCGATCACCTGGTCAGGAAAATCTAGTATCTTGGGCACGCCCTCTTCTGACAAAGCCGGAAGGGTTGGCAAGGATCATCGATCCGACCCTCGGCGCTTTATATCCTCGGGATAGTGCTGCAAAGGTCGCCGCAATCGCTTCCATGTGCGTTGAGCCAGAAGTATCTCACCGCCCGTTCATGGGCGAGGTGGTTCAGGCCCTGAAATTGGTGTGCGACGAAAGCGATGAGTGCAGGCATTCAGGGAGCTGCAGCACTGAAGGATCCTCGATTAAAGATTGCCCTGACAGCACAGGTATGTTGTATGCTGTCTCAGCTGCTCATGCAGGAGGAGATGCTTCCGGCTTGTTTGGAATGCACTCAGGTTCTGGTCCGCTCAGGACAGGCAGAAGCAGGCATTTTTGGCAGAGGTTTAGAGGGTTAGCTTCCGGGAGTGAGAGCGAGCATTGGGCTACCCACAGATTCAGGAGCAGATCAGAACATAGGTGGCCTTAGCTGTTTATGCAAATGATTTTGTGGGAGAGAAGAGGGATATAGACAAATTGTGGAGAGCCCAAGCTTCAGAATCATTGGCTGTAAAGTTCATTTGATGATCATGAAAACTTCAGTCAGATTATATACTCTGGAATGCTACTGCTCTCGAGAATGATTTCAGCATGAGTGACAGCTGACGTTAAATGGATGGGACATCTTTTCACATTATTTAAAAAAAATTAAATAAAAAATTCTGTTCATGTTTGATTCTAGATTCAAATCATTGAATGTCTGCTCTGCTAATTTCTTCTCTTCTGATCTTCTGATTATTGTCTGCTCATATCTGTGATATTGCAAGTGATATTACTTTGGGGAGAAATGTAATCAGAACAAAATAATAATAGAAAAATGAATAAAAACAATAAAAGAATGCATAATTTATAATTATTCTGCTGCTAATGATGTTTGTCTTCTATAGCATAAAGCATGAATTCGTTCTACAATATACAATCTTGTAAATATT

Network for GWHGAAEX012337

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.16	Pkinase_Tyr	695	964	6.90E-50

Protein Sequence

>GWHPAAEX012337
MEQRGMDIPRRAFQCLVFLLGIFRTRGSVPNPQTMIPQSPKAFAPINHASAPFLPSSPPTFAAKEHKMLGSAIPPQRSQVLNTFHNLCHDLASSIVITPSTLVRCGTPVGEVQGKPSNGAPLTLPHAAAPSPSVFPLIPQDVPPTVPRIAPSTVRMPGAKTFNGPMMPPMIAPTNNSHFNDSFPILSPMPRDSNNTRTPSVSHPLPPEGRIAQSPQPAGKFSVPGHKDGKIEGIPASAPFSVSPSSATSGSLHSPPPLHQHVRIPKFKRDPILKHVVSPAPLPYFGRPVFSLAPVNHSPSEVPKNARRNIAPWHNAEGPEANPAPLPQPPMLNNKNKPYAPSPSAEGSFVNHAPMHPHIEISKKPYFPPDQAPSSGKSATPVSSPTTPHTHNRWPIYYPAPSPRSQPPLPQPILLLPPPPPNLRCGPIMCQEPLVNPLPGSPCTCVMPIKVGLRLSVALYTFFPLVSKFAQEIASGIFVKQSQVRIMGANAASEDTEKTIVLIDLVPLGRYFDKTTVFLSYEKFWHKQVKIQVSYFGDYDVLYVLYPGLPPSPPVPPAYIISEGKGYGSDNNARGIRPLGVDVRKQKRIVKLSGSLITIIFLSAVILLVLIFGAVWFLLSRNWKHSDLPASRSQSLHTPSSKFAVAARAAPIPTGTRPNSASISFNSSIATYTGSTKGFSLADIENMTNKFDDLRIIGEGGFGRVYKGTLVDGMKVAVKALKRDDKQGEREFLAEVEMLGRLHHRNLVKLIGICAEENTRCLIYELIPNGSVESHLHGADKDISPLDWNARMKIALGAARGLAYLHEDSSPRVIHRDFKSSNILLEHDNTPKVSDFGLAREAMDEQNEHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMLRSPGQENLVSWARPLLTKPEGLARIIDPTLGALYPRDSAAKVAAIASMCVEPEVSHRPFMGEVVQALKLVCDESDECRHSGSCSTEGSSIKDCPDSTGMLYAVSAAHAGGDASGLFGMHSGSGPLRTGRSRHFWQRFRGLASGSESEHWATHRFRSRSEHRWP

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_Extensin

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0005524	Molecular Function	ATP binding
GO:0004672	Molecular Function	protein kinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	10.630
SRP064423	SRR2545915	Juvenile tuber	13.590
SRP108465	SRR5643513	five period of Gastrodia elata	9.160
	SRR5643514	five period of Gastrodia elata	8.830
	SRR5643515	five period of Gastrodia elata	9.670
	SRR5643524	five period of Gastrodia elata	8.910
	SRR5643525	five period of Gastrodia elata	13.430
	SRR5643528	five period of Gastrodia elata	9.560
	SRR5643658	five period of Gastrodia elata	12.740
	SRR5643659	five period of Gastrodia elata	14.570
	SRR5643660	five period of Gastrodia elata	12.580
	SRR5643661	five period of Gastrodia elata	12.670
	SRR5643662	five period of Gastrodia elata	11.410
	SRR5643663	five period of Gastrodia elata	13.280
	SRR5643664	five period of Gastrodia elata	12.420
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	9.370
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.180
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.450
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.030
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.490
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	7.530
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	8.610
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.930
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.140
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.200
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	8.710
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	8.710
SRP279888	Gastro	Gastrodia elata tuber	12.50
	Juven	Juvenile tuber	12.15
	Mother_Gastro	Mother tuber of Gastrodia elata	7.51
	Mother_Juven	Mother tuber of Juvenile	6.32