Gene detail

Detail information of GWHGAAEX012340/evm.TU.scaffold_42.154

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|225630433\|ref\|YP_002727224.1\|	7.00E-06	Ankyrin repeat domain protein [Wolbachia sp. wRi]
KOG	KOG0504	6.00E-161	FOG: Ankyrin repeat
nr	gi\|348161629\|gb\|AEP68016.1\|	0	NPR1 [Phalaenopsis aphrodite subsp. formosana]
Swissprot	tr\|P93002\|NPR1_ARATH	2.00E-161	Regulatory protein NPR1
trEMBL	tr\|G5DCY4\|G5DCY4_PHAAO	0	NPR1 {ECO:0000313\|EMBL:AEP68016.1}
TAIR	AT1G64280	6.00E-161	regulatory protein (NPR1)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000050	4261319	4277459	+

Transcript Sequence
>GWHTAAEX012340 GGTGGATGCATCAGTATCATCACCTTGTTTCTTTTTAGCGTCATCACTGATGTCAATATGCTCGAGGGTCAATGAACAGCTTCCTAAAATTGTCTGGTCTCTTCAACGATCTTGCTCCATACCTTGCCTCCAATGCTGCGTCCGCTCCTGTGCTCCTTCAATGGCGTCCGGAGTTCAAGCCACTGATTTCTCAGACTCGGACAATGGCAGTAGCATCTCCTTGTCTGAAAACCTAGATCCCTGTCTGCCGGACTTCGAAGCCCTTCGCCGCCTTGCCGACAACGTCGGAGCCCTTTTCCTCTCTCGGAACTTCGATTTCTGCGTCGACGCTCGCATCACCATCGGATCCACTGAGTTCGGCGTTCATCGCTGCGTTCTCTCAGCTCGCAGCTCCTTCTTCCGCGATATCTTCTCGAGGAAGGGGAAGACGAGGATTAATCTCAATGAACTGTTGCCAGATTTTGGCGTGAGCTTCGATGCTTTGGCTCTCGTCCTCGAGTATCTATACAGCGGGAGAGTCAGCCCGTTGCCCAAGGGCGTGTGTATGTGTGCAGATGATGAATGCCCGCATGTTGGATGCCGCCCGGCGGTCAATTTCATGGTCGAGGTTCTCTATGTGTCTTTCGTCTTTCAGATCTCTGAGCTCGTGAATCTTTTTCAGAGGCATCTTCTTGATATTCTTGACAGGGTAGCTATAGATGATATACCTGTTATTCTCTCTGTTGCAAATTTGTGTGGTGATTTATGCGGAAGATTGCTTATTAAGTGCACAGAAATTGTGGTCAACTCGGACTTAGATGCTGCAACTCTTGAGAAAGCATTGCCCTCTGACATTATCGGGCAAGTAGCTGAAGCTCGTGAGACTTTGGGCCTGCAAGCTCTTGAGAGTATTGGTTTTCCAAACAAGCATGTGAAGAGAATTCACAGAGCTCTTGATTCAGATGACGTTGAATTAGTGAGGATGTTGTTAAAGGAGGGACATACTTCTCTAGATGATGCATATGCACTACATTATGCTGTGGCCCACTGCGATGCAAAAGTTATTTCAGAGCTTTTAGATCTCAGACTCGCAGATGTCAACCATAGGAATCAAAGGGCATATACGGTGCTTCATATTGCAGCTATGCGAAAAGAACCTAAAATAATTGTTTCTCTTCTAACAAAAGGTGCTAGGCCAGCTGATCTTACAATAGACGGAAGAAAAGCAGTTCAAATTTGCAAGAGGCTTACGAGATCTGTGGACTACTATAGAGCCATAGAAGAAGGGAAGGATTCGCCCAAGGAAAGGTTATGCATTGAGATTTTAGAGCAGGCTGAGAGACAAGATCCACTTGTAGGAGAAGCTACTTCTTTAGCAATGGCTGGGGATGACTTGCACGGCAGATTGTTGTACCTTGAAAATAGAGTTGCACTGGCAAAGATGCTATTCCCAGTAGAGGCAAGAGTCGCCATGGACATAGCTCAAGTTGATGGCACCTTGGAGTTTTCCCTCTGCACTTCTGTAAGCCATAATAGATCCACCGTCGACTTGAATGAAACCCCTTTCAAGATCAAGAAAGATCATCTGATCCGTATGAAAGCCCTCACCCGCACAGTTGAACTTGGGAAACGCTTCTTTCCACGTTGCTCAAGCGTCCTTAACGAAATCATGGACGATGAGTTCATTGATCTTGCTTCCTTCGGGCACAATGCCTGGGATGACCGGAGGAAGAAGAGGTTCAGGGAGCTCGAAAATGTTTGTTTCAAAGCTTTTACTGAGGACATGGAAGAGCATGATAGGGCTGCTAAATCCTCGTCATCAGCAGCATCATCTTCATCTAGGAAATTGGGTTAAATACATCATGTCATGATAGTTTGGTTTTCATATGGAGTAATCTCATTTACAAATATAATTCAGGCAGGATATCATGCATGTAGATATAAGGTTTTGATCAAATAATGTATATTTCTGCTTTGTGGTGGATAAGTGGGTTGGATTTTCGTTTGAAGGGGTTTTATTTTAAGTAGCAATGAAGCCAGTGCAGATGATGCTGTTTTATCTTTTCGTGCATCTCTCATTTCTCAGTTGTTTTAAATTGAGTTTTGATATGAAGTTTAAAGTTTAAATTGCTGCCTAATTATCTGCTTAATGTAAACATTTTAAAGAAAGTTGAAATAAAAAAAAATCTAATGAAAAAATCTTTCCAA

Network for GWHGAAEX012340

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00651.30	BTB	86	160	2.50E-11
PF11900.7	DUF3420	248	292	1.40E-07
PF12313.7	NPR1_like_C	391	586	1.80E-78

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	TRAF
Ubiquitin Family	BTB

KEGG pathway

KO	Enzyme	pathway	mapID
K14508	NPR1	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	62.680
SRP064423	SRR2545915	Juvenile tuber	48.420
SRP108465	SRR5643513	five period of Gastrodia elata	84.390
	SRR5643514	five period of Gastrodia elata	68.290
	SRR5643515	five period of Gastrodia elata	60.550
	SRR5643524	five period of Gastrodia elata	69.120
	SRR5643525	five period of Gastrodia elata	51.140
	SRR5643528	five period of Gastrodia elata	63.420
	SRR5643658	five period of Gastrodia elata	47.930
	SRR5643659	five period of Gastrodia elata	46.360
	SRR5643660	five period of Gastrodia elata	45.230
	SRR5643661	five period of Gastrodia elata	38.760
	SRR5643662	five period of Gastrodia elata	38.120
	SRR5643663	five period of Gastrodia elata	38.670
	SRR5643664	five period of Gastrodia elata	42.400
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	67.550
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	58.650
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	65.380
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	70.790
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	65.380
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	78.610
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	69.640
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	60.740
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	59.510
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	61.220
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	69.620
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	69.620
SRP279888	Gastro	Gastrodia elata tuber	45.48
	Juven	Juvenile tuber	84.30
	Mother_Gastro	Mother tuber of Gastrodia elata	75.59
	Mother_Juven	Mother tuber of Juvenile	80.04