Detail information of GWHGAAEX012343/evm.TU.scaffold_42.159
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|108760510|ref|YP_632759.1| | 3.00E-19 | serine/threonine-protein kinase PKN1 [Myxococcus xanthus DK 1622] |
| KOG | KOG1164 | 0 | Casein kinase (serine/threonine/tyrosine protein kinase) |
| nr | gi|743799414|ref|XP_010925469.1| | 0 | PREDICTED: casein kinase I isoform delta-like isoform X2 [Elaeis guineensis] |
| Swissprot | tr|P42158|KC1D_ARATH | 0 | Casein kinase I isoform delta-like |
| trEMBL | tr|M0SMD3|M0SMD3_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P09160_001} |
| TAIR | AT1G72710 | 0 | casein kinase 1-like protein 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000050 | 4363731 | 4394343 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012343
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00069.24 | Pkinase | 10 | 227 | 5.00E-27 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | CK1_CK1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02218 | CSNK1, CKI | MAPK signaling pathway - yeast | map04011 |
| Hippo signaling pathway - multiple species | map04392 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 71.770 |
| SRR2545915 | Juvenile tuber | 63.340 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 57.210 |
| SRR5643514 | five period of Gastrodia elata | 55.530 | |
| SRR5643515 | five period of Gastrodia elata | 61.150 | |
| SRR5643524 | five period of Gastrodia elata | 60.620 | |
| SRR5643525 | five period of Gastrodia elata | 65.330 | |
| SRR5643528 | five period of Gastrodia elata | 72.640 | |
| SRR5643658 | five period of Gastrodia elata | 69.450 | |
| SRR5643659 | five period of Gastrodia elata | 63.830 | |
| SRR5643660 | five period of Gastrodia elata | 67.530 | |
| SRR5643661 | five period of Gastrodia elata | 61.710 | |
| SRR5643662 | five period of Gastrodia elata | 61.260 | |
| SRR5643663 | five period of Gastrodia elata | 69.450 | |
| SRR5643664 | five period of Gastrodia elata | 63.140 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 53.010 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 48.400 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 51.950 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 52.720 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 50.290 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 55.310 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 53.400 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 50.360 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 56.910 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 51.990 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 62.030 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 62.030 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 57.79 |
| Juven | Juvenile tuber | 70.56 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 62.86 | |
| Mother_Juven | Mother tuber of Juvenile | 77.58 |