Gene detail

Detail information of GWHGAAEX012346/evm.TU.scaffold_42.162

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672107051\|ref\|XP_008791551.1\|	0	PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q9FHK4\|Y5519_ARATH	6.00E-12	Uncharacterized protein At5g05190
trEMBL	tr\|B8AFA0\|B8AFA0_ORYSI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:EEC72867.1}
TAIR	AT3G61670	1.00E-97	Protein of unknown function (DUF3133)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000050	4579731	4587339	-

Transcript Sequence
>GWHTAAEX012346 CCTTATTTTACCGCAATCTTGAACAAGGAGAAAGGAAGGAATAGGCTCCAACTCCATGAATTAATCTCCTTTTCCATTGTTACCCTGAATAAAGATCAAAGCCAAAAATCCAAAATCCGCCAGCAGCTTAAGAGACGGAAAGAGAAAGCTCATTCCTTGCTACCTCACCTCTGCTTCCTCGCTTACCCGTTTAACAAATCAAACATTCAAAGCCAAAGCTACAGCAAAAGAAGAAAATAAAGCAAAAGAAATACTCTCTCTCTCTCTCTCTCATATAATTATACCCAACCCAACCACTTCCAAATCCCAGCATCTCCTTCATTTCTCCTTCCCGTCTCTCCGTACGCAAATATGCCCGTCCTCTATCTCACACCCTCCGTCAAATCGCAATCTTGTTTTTTCTTTCTCCAAAATGGTGTATTGATGAGAGGAAAATGTCCAAGCTGAGGGCTTCATAGCGTTGGCCAAAACGGTACCACCGGGATTCCTGGTGCTTAGGGTTTTAGTGGGCGAGAGAGAGCATTCGTGGTTGCTTTCTTTCTTTTCCTTTTTTTTTTTTCCCCCCTTTTTTGTTTTGGTTTTAAGGAATGGCGGAATGCGAAGGAGCAGCTGCAAAGGTTCGGGTCGTTCGCTGCCCCAAATGTAACAAGCTTCTCCCTGAGCTTGCCGATTTCACTGTTTACCGCTGCGGCGGCTGCGACGCTACACTTCAAGCAAAAAAGCAACCTTCAATTTTGAATGTCTCAGCGTCGAAGTCTGATGGAAATTTGGTGAAATGTTCTGAGAAGAATCCCAATGTTGATGCTGAGAGTCATGCATTTGAGTTTGAGGATGAGCAAGGGCTGAACAAAACTTGCGTTGATGGTTTGGAAATTACCAATGAGAAAAGTGATGTCTTGAAAGTAGGAGGGTCACCAAGAATGATTAGTAATAAAATTTTTAAACATCGATCAGTGGGTCCCCCTGTGGATGGGCTGGGTAAAGGCAAGGTGGAAAATGACCATGAATTTAAAGCTCAGACATTGGTTTCAAATGGTCACCCTGTACTTCGGCCGACAAATGTGGAGGGTGATGAAATGACTAGCACATCGGCTTTCCAAGGAATATCAAAGGTTTTCATGGGATATAATCAGGCAGCCTCTTATCCTGTTTTGGGTCCAACGAGCTGCAATTATAATCCTCATCACATTAATACCGAGGGCGCTGCTAAAAGGAAGAACATAGAGGGTTCTGACCGTGTCGAGCTCCTTGAACAAGATCGTGCCGAATTGCTGAGAAAGCTTGATGAGTTGAGAGATCAGCTGAAGCGATCTTGCGAAGTTGTTGAAGTCCCGAAAGAACATGTTCCTGTGAACAATATGCCGGCCTTACATGGTAGAGGCAGCTTGTTTCCTGATGGGTCTTCTGAATTGAATTGCAATCATTCTCAGCATTCTCCTTTTACTAATGGGCAAAATGTGGATATGCCTCAATTTTATCCACCTGCTCATTTGCAGAATGGTGTTCATGGATGTAGGGAGGCTTCAAGCTCATGCTCACTCGCTGCTTTTAATTGCCATGGTCAGTACCCACTGATATCCTCCAACAGCTACATCTATGGGAAGTTTGATCCAAATCTAGTTCGTTCTTGTCATAATGATGGTTTCTATCAGCAGCCTGCCTGTACTTGCATGCATTGTTACAATGGCCAGTGGTTGCCACCGGCACAAGTGCCTTCGACTGTTCCAAGTAACCTAAGGGTTCCTCCTTGTCCTCTCGGAAACCATGGTTTTCATGCCGTAGATGGCCCTTCTATGTTTGGAGCACATGGTTATAACCATAGAGTTCACAAAGCTCCTTTGTACCCTTATGATTTACACAATCAGCACAATGCTACCTTTCCCATAAAAGATAAACGGCCTTGTCGCCCTGTTGCTGGCGCAGCCCCTTTCATAGTATGTTATAATTGTTCTGAGCTCTTGCAAATTCCCGAAGAGTTTCTGCGGATGGGGAAGCATCAGCATAAGCTGCGTTGCGGTTCGTGCTCTCAATTGATTTCGTTCGAGCTCGATGGAAGACGGCTGGTTTCTTCTAACAATGTATTGACATTGCCCACAACTTCTGAGAACGAAAATTTAAGTAATGGATTGAAGGATGTTTTGCAGTGTCGCGGAAACATCAACCGTCGCCAAGTTATTTCATACTCTATTGATTATGATAGCCCAAACTATTATGATGCTCAATCTTCTGATGAGAAAGTAGTGTTGACTTCTTATCCTATTTCGAACAATACGGTAGATAACGAGTGTGGGCTTAATCTAAGTGATTCTGAGAAGGTGCACGGACTTTGTTCATCTTCGGGAACTTTTGAGGGTGTGGAAAGTCCGGATACTGTGATTTTTCCTGGAGATGTTCCCAGTTCAACAGAGCTTCCCGCAGAAGGTGATGCCATTACTCGGGTTCCGAGTTTGCCTTTGCGGGAACATTTTGGGTACCCTTCGGGCAATCAAATAGCTGATGATACTGGGAGTGGTAGTAGGAGCCGACGCTCTGATCAAGAGAGGGTTGCTTCCTATACATCCAATTTCAAACAAAATTCAGTGAAAGATGTGCCCGTGGCTACTGAGATGGACTTGTCAGCTGAAGATTACCCAAATGCCGGTTTTTCTCAGGAGTCTTGGGATGCAAACAAAGAAGAAGAGGAGCCTCGGGTTAGTAAGGGCGGCGATTCGTTCCTTGCTGGTCTCATTAAGAAAAGCTTCAAGGATTTCTCTCGATTCAATCAATCAACGGAAGGTGGCAGGTCTAAAGTTTCAATAAATGGGCATTCTATCTCTGATCGCCTGGTCAAGAGGGCGGAAAAGCTTGCTGGGCCTATTCATCCTGGGGATTATTGGTATGACTATCGTGCAGGATTCTGGGGCGTGATGGGACATGCGTGTCTCGGAATTATTCCGCCATTTATTGAGGAGTTTAATTATCCTATGAAGAAGAAATGTGCTGCTGGAAATACTAGTGTTTTTGTGAATGGGAGAGAGCTTAATGATAAAGACTTAAGTTTGCTCTCCGGTAGAGGACTTCCGGGTACTGCTGGTCGATCTTATGTTATTGAGATTTCTGGTAAAGTTTGGGATGAAGAAACTGGCGAAGAGCTTGATTGTCTTGGAAAGCTCGCACCAACAGTTGAAAGAGTGAAGCGTGGATTTGGCATGCGAACACCCAGAGATAATTCTTGAGTTTCTATCATTGAACCAGAAAGCCTCATCCAGTTTGTGACTTGCAGATATCTATAGTATTAGATTATATTTTAGAGGGAAACAAAGGCAAAAATCAGAAAATTTACTTGCTATATTAGCTGTGGCATGATAATCGTAGAGAAAAGTTGGATCTTTTTTCCTTTTACTTAGTCATTTAATGTTTTTATTTGTAGTGGCAGTTTAG

Network for GWHGAAEX012346

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11331.7	zinc_ribbon_12	443	487	8.30E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.370
SRP064423	SRR2545915	Juvenile tuber	7.020
SRP108465	SRR5643513	five period of Gastrodia elata	2.980
	SRR5643514	five period of Gastrodia elata	4.630
	SRR5643515	five period of Gastrodia elata	3.860
	SRR5643524	five period of Gastrodia elata	3.900
	SRR5643525	five period of Gastrodia elata	3.050
	SRR5643528	five period of Gastrodia elata	2.010
	SRR5643658	five period of Gastrodia elata	1.780
	SRR5643659	five period of Gastrodia elata	6.140
	SRR5643660	five period of Gastrodia elata	4.640
	SRR5643661	five period of Gastrodia elata	5.330
	SRR5643662	five period of Gastrodia elata	3.500
	SRR5643663	five period of Gastrodia elata	4.330
	SRR5643664	five period of Gastrodia elata	3.550
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.730
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.620
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.490
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.920
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.550
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.270
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.900
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.660
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.910
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.220
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.610
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.610
SRP279888	Gastro	Gastrodia elata tuber	3.01
	Juven	Juvenile tuber	3.92
	Mother_Gastro	Mother tuber of Gastrodia elata	1.33
	Mother_Juven	Mother tuber of Juvenile	2.54