Detail information of GWHGAAEX012347/evm.TU.scaffold_42.163
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|383753291|ref|YP_005432194.1| | 1.00E-11 | putative beta-glucanase [Selenomonas ruminantium subsp. lactilytica TAM6421] |
| nr | gi|694996201|ref|XP_009392745.1| | 3.24E-166 | PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 8 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q8L9A9|XTH8_ARATH | 9.00E-146 | Probable xyloglucan endotransglucosylase/hydrolase protein 8 (Precursor) |
| trEMBL | tr|W1NEC4|W1NEC4_AMBTC | 3.00E-158 | Xyloglucan endotransglucosylase/hydrolase {ECO:0000256|RuleBase:RU361120} |
| TAIR | AT5G65730 | 1.00E-94 | xyloglucan endotransglucosylase/hydrolase 6 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000050 | 4611939 | 4620420 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012347
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00722.20 | Glyco_hydro_16 | 38 | 220 | 1.30E-52 |
| PF06955.11 | XET_C | 249 | 296 | 1.30E-15 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH16 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0042546 | Biological Process | cell wall biogenesis |
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0010411 | Biological Process | xyloglucan metabolic process |
| GO:0006073 | Biological Process | cellular glucan metabolic process |
| GO:0016762 | Molecular Function | xyloglucan:xyloglucosyl transferase activity |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0048046 | Cellular Component | apoplast |
| GO:0005618 | Cellular Component | cell wall |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.460 |
| SRR2545915 | Juvenile tuber | 15.880 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 20.260 |
| SRR5643514 | five period of Gastrodia elata | 22.560 | |
| SRR5643515 | five period of Gastrodia elata | 26.180 | |
| SRR5643524 | five period of Gastrodia elata | 22.080 | |
| SRR5643525 | five period of Gastrodia elata | 47.900 | |
| SRR5643528 | five period of Gastrodia elata | 46.000 | |
| SRR5643658 | five period of Gastrodia elata | 38.850 | |
| SRR5643659 | five period of Gastrodia elata | 30.170 | |
| SRR5643660 | five period of Gastrodia elata | 26.480 | |
| SRR5643661 | five period of Gastrodia elata | 27.820 | |
| SRR5643662 | five period of Gastrodia elata | 29.180 | |
| SRR5643663 | five period of Gastrodia elata | 32.240 | |
| SRR5643664 | five period of Gastrodia elata | 23.770 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.910 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.270 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 14.500 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.330 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.760 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.190 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.970 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.030 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.700 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.150 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 18.410 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 18.410 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 28.46 |
| Juven | Juvenile tuber | 14.51 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 12.67 | |
| Mother_Juven | Mother tuber of Juvenile | 8.31 |