Detail information of GWHGAAEX012354/evm.TU.scaffold_42.178
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0627 | 7.00E-62 | Heat shock transcription factor |
| nr | gi|743770299|ref|XP_010915439.1| | 6.53E-77 | PREDICTED: heat stress transcription factor C-2b-like [Elaeis guineensis] |
| Swissprot | tr|Q6EUG4|HFC2A_ORYSJ | 8.00E-74 | Heat stress transcription factor C-2a |
| trEMBL | tr|B4FXG7|B4FXG7_MAIZE | 2.00E-76 | Uncharacterized protein {ECO:0000313|EMBL:ACF86810.1, ECO:0000313|EnsemblPlants:GRMZM2G105348_P01} |
| TAIR | AT3G24520 | 7.00E-62 | heat shock transcription factor C1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000050 | 5020602 | 5022989 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012354
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00447.16 | HSF_DNA-bind | 18 | 107 | 4.90E-27 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HSF |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 52.720 |
| SRR2545915 | Juvenile tuber | 126.940 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 33.470 |
| SRR5643514 | five period of Gastrodia elata | 21.940 | |
| SRR5643515 | five period of Gastrodia elata | 45.960 | |
| SRR5643524 | five period of Gastrodia elata | 12.010 | |
| SRR5643525 | five period of Gastrodia elata | 98.680 | |
| SRR5643528 | five period of Gastrodia elata | 28.830 | |
| SRR5643658 | five period of Gastrodia elata | 68.240 | |
| SRR5643659 | five period of Gastrodia elata | 263.340 | |
| SRR5643660 | five period of Gastrodia elata | 232.610 | |
| SRR5643661 | five period of Gastrodia elata | 361.050 | |
| SRR5643662 | five period of Gastrodia elata | 231.970 | |
| SRR5643663 | five period of Gastrodia elata | 358.770 | |
| SRR5643664 | five period of Gastrodia elata | 315.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 37.080 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 14.400 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 36.370 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 26.310 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 21.310 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 20.800 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 18.630 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 32.440 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.640 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.510 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.680 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.680 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 237.58 |
| Juven | Juvenile tuber | 195.39 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 20.66 | |
| Mother_Juven | Mother tuber of Juvenile | 103.12 |