Gene detail

Detail information of GWHGAAEX012358/evm.TU.scaffold_42.183

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743799760\|ref\|XP_010925577.1\|	2.04E-177	PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X2 [Elaeis guineensis]
Swissprot	tr\|I6PL68\|HEI10_ORYSJ	7.00E-165	E3 ubiquitin-protein ligase CCNB1IP1 homolog
trEMBL	tr\|M0S899\|M0S899_MUSAM	2.00E-164	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P15580_001}
TAIR	AT1G53490	1.00E-87	RING/U-box superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000050	5112229	5120702	-

Transcript Sequence
>GWHTAAEX012358 TTAAATCCTAACCGAACCGGCTAATAAGAACGGTTAGGAGCCATTGCGTTGATGCCACCGTATAAATTGTCTTGCCGCCTCCTGTCGCCTGGAACAACTTTTTCTATCTTCAAGTGGTGAGCATTTGCCCCACCTGGCTCCGGTTGAAGAGGCGCGCAGCTCTGCTAGGGTTTCTCCCGACTCTTCTTCACATTATAGTTATCGATCTTCTCTTCTATCTCAGTTTGCTGGCTCGAATTCGAGCTCCGATTTCTCTCTCGAGGGAGTCCTATCGGTACGGGCAACTCTGAATCCCTACGAGTTGCATTCCAAGAAGTTAACAGTTTCTTCTTAGGAGCAAAGCGTCAAACTCCAATTTCAGCTCAGTTTCTAAAAATCCAAGAACAGAGAGCAGTTTCTTTGCTATCAATCGCTGTTTCTAAAGAGTCCTCACCATTTCAATGGAAGCAACACGGAGTGTAAAATGAGGTGCAATGCATGCTGGCGGGAATTGGAAGGACAGGCGATTTCAACAACCTGTGGCCACCTCTTGTGTACTGAAGATGCTGGGAAAATACTCAACAATGATGGCACCTGCCCAATTTGTGATCAGGTGCTCTCAAGAAGTCACATGCGACCAGTTGACATCAATCCTGGCGATGAATGGACAAACATGGCAATGGCTGGAGTATCTCCACAGATCCTCATGAAGGCCGCATACCGCAGCGTCATGTTCTACATCGGGCAAAAGGAGCTGGAGATGCAGTACAAAATGAACAAAATTGTCGGCCAATGTCGGCAAAAATGCGAGTCGATGCAAGAGAAGTTCACCGAGAAGCTGGAGCAACTTCATGCCGCCTGCCAAAAGCTCTCCAAGAGGTGTCAGGTGATCGAGCAGGAGAACGAAAGCCTGTCCAAAGACAGGCAAGAACTCCAGGAAAAATATGCCGAGAAATCCAGGCAGAAGAGAAAACTAGACGAAATGTATGACCAGCTGAGGAGCGAATATGAGACGATGAAGCGTTCGGCCATCCAACCGGCGGCCAATTTCTTTCCAAGAGCCCAGCCGGACTTGTTCGCCAGCATGCCCAACGTGCTGGACAGCAGAGACCCTCCTACTAGACAAGGGCAAAGAGAGGAGATTTGGCCTTCGGTGAGACAGAAGAATTCCACCTCTTCAGCATTCGATCTTTCCGGAGGATCGCCGGTGAAGATTGCGGCGGCCGGAATTGATGCCCGGCCGGGCAGGCACGTCCGCCCTGTCTTCGGCGCTGGCGTTAGCAATCCCGCTTCCACGTTACGGAACCTCATCATCTCCCCCATGAAGAGGCCCCAGCTATCGCGAAATCGCTCCAATTTGTTCACGTTATGAGAAGGATGGCAGGGATCATGCATACAGGTTCTTGAATTTTGAAAATTGTGCGATCAAATTCCTTCTCTCCTTAATTTTTTTTTTTTTTT

Network for GWHGAAEX012358

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14634.5	zf-RING_5	2	43	1.00E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.420
SRP064423	SRR2545915	Juvenile tuber	5.050
SRP108465	SRR5643513	five period of Gastrodia elata	5.460
	SRR5643514	five period of Gastrodia elata	4.730
	SRR5643515	five period of Gastrodia elata	4.290
	SRR5643524	five period of Gastrodia elata	4.340
	SRR5643525	five period of Gastrodia elata	13.320
	SRR5643528	five period of Gastrodia elata	8.940
	SRR5643658	five period of Gastrodia elata	11.500
	SRR5643659	five period of Gastrodia elata	6.680
	SRR5643660	five period of Gastrodia elata	6.200
	SRR5643661	five period of Gastrodia elata	7.040
	SRR5643662	five period of Gastrodia elata	5.680
	SRR5643663	five period of Gastrodia elata	5.490
	SRR5643664	five period of Gastrodia elata	6.090
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.460
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.950
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.300
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.310
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.590
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.130
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.460
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.210
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.950
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.170
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.360
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.360
SRP279888	Gastro	Gastrodia elata tuber	4.64
	Juven	Juvenile tuber	4.05
	Mother_Gastro	Mother tuber of Gastrodia elata	3.32
	Mother_Juven	Mother tuber of Juvenile	2.63