Detail information of GWHGAAEX012360/evm.TU.scaffold_42.185
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|672132840|ref|XP_008790009.1| | 2.22E-135 | PREDICTED: uncharacterized protein LOC103707345 [Phoenix dactylifera] |
| trEMBL | tr|A0A061F7V3|A0A061F7V3_THECC | 8.00E-124 | DNA-directed DNA polymerases, putative {ECO:0000313|EMBL:EOY13440.1} |
| TAIR | AT1G78650 | 4.00E-83 | DNA-directed DNA polymerases |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000050 | 5152946 | 5198649 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012360
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF09507.9 | CDC27 | 23 | 523 | 6.80E-25 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03504 | POLD3 | DNA replication | map03030 |
| Base excision repair | map03410 | ||
| Nucleotide excision repair | map03420 | ||
| Mismatch repair | map03430 | ||
| Homologous recombination | map03440 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006260 | Biological Process | DNA replication |
| GO:0003887 | Molecular Function | DNA-directed DNA polymerase activity |
| GO:0043625 | Cellular Component | delta DNA polymerase complex |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 20.560 |
| SRR2545915 | Juvenile tuber | 22.920 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 17.330 |
| SRR5643514 | five period of Gastrodia elata | 14.670 | |
| SRR5643515 | five period of Gastrodia elata | 11.430 | |
| SRR5643524 | five period of Gastrodia elata | 13.740 | |
| SRR5643525 | five period of Gastrodia elata | 10.060 | |
| SRR5643528 | five period of Gastrodia elata | 12.470 | |
| SRR5643658 | five period of Gastrodia elata | 12.710 | |
| SRR5643659 | five period of Gastrodia elata | 12.490 | |
| SRR5643660 | five period of Gastrodia elata | 11.180 | |
| SRR5643661 | five period of Gastrodia elata | 9.670 | |
| SRR5643662 | five period of Gastrodia elata | 8.360 | |
| SRR5643663 | five period of Gastrodia elata | 10.000 | |
| SRR5643664 | five period of Gastrodia elata | 9.810 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 15.920 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 14.350 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 17.570 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.500 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 12.930 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 14.190 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 15.740 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.290 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.660 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 15.900 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 19.550 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 19.550 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 16.30 |
| Juven | Juvenile tuber | 26.33 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 12.11 | |
| Mother_Juven | Mother tuber of Juvenile | 16.78 |