Detail information of GWHGAAEX012362/evm.TU.scaffold_42.187
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|530779864|ref|YP_008431664.1| | 6.00E-29 | hypothetical protein N186_01315 [Thermofilum sp. 1910b] |
| KOG | KOG0087 | 2.00E-121 | GTPase Rab11/YPT3, small G protein superfamily |
| nr | gi|568826507|ref|XP_006467613.1| | 1.09E-126 | PREDICTED: ras-related protein RABA1d-like [Citrus sinensis] |
| Swissprot | tr|P40393|RIC2_ORYSJ | 2.00E-123 | Ras-related protein RIC2 |
| trEMBL | tr|V4TQI5|V4TQI5_9ROSI | 1.00E-126 | Uncharacterized protein {ECO:0000313|EMBL:ESR62783.1} |
| TAIR | AT4G18800 | 2.00E-121 | RAB GTPase homolog A1D |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000050 | 5221531 | 5233307 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012362
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00071.21 | Ras | 15 | 175 | 8.30E-59 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K07904 | RAB11A | Endocytosis | map04144 |
| Pancreatic secretion | map04972 | ||
| Vasopressin-regulated water reabsorption | map04962 | ||
| Endocrine and other factor-regulated calcium reabsorption | map04961 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003924 | Molecular Function | GTPase activity |
| GO:0005525 | Molecular Function | GTP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 67.510 |
| SRR2545915 | Juvenile tuber | 76.380 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 116.200 |
| SRR5643514 | five period of Gastrodia elata | 98.400 | |
| SRR5643515 | five period of Gastrodia elata | 106.240 | |
| SRR5643524 | five period of Gastrodia elata | 94.590 | |
| SRR5643525 | five period of Gastrodia elata | 154.350 | |
| SRR5643528 | five period of Gastrodia elata | 95.670 | |
| SRR5643658 | five period of Gastrodia elata | 116.740 | |
| SRR5643659 | five period of Gastrodia elata | 177.830 | |
| SRR5643660 | five period of Gastrodia elata | 200.600 | |
| SRR5643661 | five period of Gastrodia elata | 184.950 | |
| SRR5643662 | five period of Gastrodia elata | 179.970 | |
| SRR5643663 | five period of Gastrodia elata | 167.240 | |
| SRR5643664 | five period of Gastrodia elata | 200.680 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 116.630 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 94.730 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 127.070 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 109.740 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 92.600 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 90.170 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 108.330 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 105.170 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 105.000 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 95.940 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 92.810 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 92.810 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 195.11 |
| Juven | Juvenile tuber | 185.73 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 61.58 | |
| Mother_Juven | Mother tuber of Juvenile | 99.33 |