Gene detail

Detail information of GWHGAAEX012375/evm.TU.scaffold_42.205_evm.TU.scaffold_42.206

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743756921\|ref\|XP_010919389.1\|	PREDICTED: uncharacterized protein LOC105043506 isoform X2 [Elaeis guineensis]
trEMBL	tr\|A0A061EB47\|A0A061EB47_THECC	Homeodomain-like transcriptional regulator, putative isoform 2 {ECO:0000313\|EMBL:EOX99523.1}
TAIR	AT5G44180	Homeodomain-like transcriptional regulator

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000050	5400233	5463005	-

Transcript Sequence
>GWHTAAEX012375 GTAGAAGTTCCTTCAAAATTTCTTAGCAACTTTCGCTGTCGGACGTTTTTACAAGTGCTAATCCCCAACTCCCAGCATTTTTTTTCTGGCTCTTTCATATTTTGAACTCTCTATTCTTGCTCTTTCATCAAACTCTTCTCGCCTCTGGTTCTGCAGTCATTATCTATATTCTGGGTTTTCTCCCATGGAGATCTCCTTGGAATCTCCCATTGGATGCTTGCATTTGAGAAAAGAGGAAAAGAGGGTCGACACAGCGCGCTTCCGTGAAAGGATAATACCCTACCTTCTATCTCCTCGTTATTTCTATTGCAATCCCTGACTTAACAGTAGGATTCTGGTTCTAGAATGGAGTTTAGTGATGGAAGAGGAGGTGAACCATCTCAGGATGCCTCTGATAATTTTCCCAGGCAACCAAAGAGGAAGATGAAGACTCCCTCCCAAATAGATGTTCTCGAGAAAGCCTACAATGTTTCCTCGAAGTTGTCGGAGCAGATGAGGCTAGAGCTTGCAATGAAGACAGATCTCTCTTCCCGGGAGATATCAATGTGGTTTGCCAACAGGAGGTTTCAGAGAAAACAGACACATTTGCTCATAGAGTCTAATAGGGAGGGTGAACATCCCTTCCCACTTCAGTTAACCCCTAGCAGAGGTGGAAGTGGATTTGAGTTGGCCGCCCATCATTTCATGGATTCCTCCACAAACGAAGAATGGCTTAGAGAAAAATCTAGTAAGATGAACTTGCGGATTCCAGCAGCCCCACAAGTAAAACGGAAAACCCATGTACAGCAGGTGATGCCACAAATGAAAACATCACATCATGCATTGGAACCTTCGGTGATAACTTTTTTGGAGAGGAAGCTGGGAGGACGATTAAGAGACGATGGTCCTCTTATTGGCATAAAATTTGATCCTCTGCCACCTGGTGCATTTGGGTCTGCATTATGTAGCAGCAATGAAAGAAAGCAAAAGCCAGAACAGCTAATTAAAACCACTGAAGTAGAATCTATTTTGAAACAGAATGAAGGAATCAATAAGGCATCCTCTTTATTCCAACAAATGAAATTTGGCCATTCGAATAACTCAACCAGGAGATTGCCTATTGGTGAACTTGGTTGTACAGTTCATCCCAATTCAGTTCATAATTTCAGTAGTAAGTTTCCTTGTTTTTCTTCTGGGAAGCATCATCCTCAGAAAAAAGACTTGCATCCAGACTGTTCTCTTCAAGATGCTCAGTTTACCACTGACCCAGTCAATGTTATAGTTGATAAGTTTGTACTAACTGATACGCTGGCCAATGAATTTTCTTGTCAAGTAGAGAGGCTGTGCAAGAGTGAAAAGGTTCAAACATCCATTAAAGTTGAAGATCTGTGTAGCTTGGTAGCACGTAAGAAACAATGTGTTAAAAGAAAGGCGAAGGAGAAAACACAAGCATATAATGAGATGCATGATCTTGAATTGGATAATGGAAAAGAAGTTGAAATTCTTGAAAAACATTCTCTTGAGGGAAAGCTGCAGCATGCTAATCAAACTGATGGTTGCGAAAAGCTACTGAATAACAGAAATTTGGAGAATGAAGAGATGAGGAAGCCAAAAGAATTACGATGTGGGGCAGCTGCTATGGAGGAATCTGCTAATAAAACTTTTATAGCTCATGGAAATATCCAAGGAAACATGAAGCTTATAGAGGATGAGCAACTTGAACTTATGAAGTTAGCTGCATCAAAGATAGGTTTACATTCCATTAATATTCTTGACAAGGATACTTTGGATAAGCTGCATTCTTTTAAAGATTTGTTAGGTCCATTTCCTCCAGAATCAGTATCTATGAAACGGCCATTTGCTGTCTCGCCATGGACAGATTCTGAAGAGAACGTTGGAAATCTTCTCATGGTTTGGAAATTTTTAATTACTTTTGCTGGTGATTTGGGACTTTGGCCATTCACCCTTGATGAGTTTGCACAAGCGTTTCATGATCATGATTCAAGATTATTGGCAGAATTACATGTTGCTTTACTGAAATACATTATTAGAGATCTTGAAGATGCGAGAAAAATTCGTGCCTATGGACCGCACAATTGTGAAAACAATGCTTCTGATAATCCAGGAAATTCATCTTTGAACATTGTTTATGGGGCCCATGCTTGGGGTTTTGATATGAATCTCTGGAAGAACAGGTTAAATTTTCTTACATGGCCTGAAATATTACGTCAGGTTGTTCTATCTGCTGGCTTTGGACCTAAATTGAAGAAGAATGCTGGCTTTGCATCTTGCCATGGGTATAAGGATGGGAATTCTAGTGACTGGTCTGAAAGTTTAGATAAATACGCTGGTGGAAGTAATTCTGTTATCGTGAAAGAAAAAGATAAGAGTTCATCCTGTGACAGTAGTTATCCACTAATTCCTGGAACTTTGGAGTTCGCCGTGTTCCAGTCTTTTTTTCTTGCCGGAAAAGACGGACTAACACCGGTGGAGATTGCAGACTGCATTCATAAACATAGGCTGTGCGATCTTACAACAATGGAGTCAGCACATGCATCTATTGCCAATATTCTATCAAAAGATGTTGAACTTTTTGAAAGGGTTGGTTTAGCTATATATCGTATAAAATCTTGTTTTCGAAGGGACCCTTCCGTAGTTGAGAAGATATTAGAAGGTCTTGTTGATAGAGCTGATGACATTGCGGACAGTTTTGATGAATATCATTTAGATCTTACTAGAGAAGGCTTGCGCAACTTCAATAGGAATAAAGGTTCAACTTCATTAATAAAATCAATGCAAAATATGAGTGCTGATGATCCTGAACTAATAAATGAAAGCGGGTTTGAAAATGTGGATCAAGTTTCTTTGTTTTTTCTTGAAGATTCAGAAGATGGAATTGTTTTAAGCAGCAAGAGTGATGAGCCCTCTGATTCTATTTATGAGGCCAGCAGTGCTTGTGGAGACATGAAGGGCAAAGAACAATTTTCTGTGTCATGGATTCAAGAATTGTCCGAAGGAGAGTATTTTTTATTAAGCACTGAGGAGCGCCTCAAAGTGCTAGTTACTTTAGTTGATGTGGTTGCTGAAGGAAACTCATTTCATGCTTTCATTGAGGAACGCTTGAAAGAAGCTCAGATCTATAAGAAGAAGTTGATGGAAAAGATGCGACTGAACAAAAAGCTCCTAGAAGAAAGTCATGGTCATATCGATGATGCTAATTATGCTTATGCAAATGCATCTTCTTTTACTAAGCATGCTCTTAAATGCGGTCCTAATTTTGTTAACAGTTCATCAGCTCAGACAAAGTATTTGTGGCAGGAATTCTCACCTAGTTCAAGTTGTATTGTACCTGAGAAATTTGAACATACCACAACATTAAGTTTATCAAAATTAAAACTGTTCATCGACAAGCAGGCAGAAATGTTGCATTCATACAGATTTGTACCGTTGGGTGAAGATCGCAGGCACAATAGATACTGGCAATTTTCAACATCTTCATCTAGGAATGATCCAGGCTCTGGAAGAATTTTTTTTGAGTCTAGAGATGGTTTCTGGAGGGTTATTGACTCGGATGAGGCATTTGACGCTATTCTAGCTGCCCTGGACATCCATGGGATCAGGGAGTCACACTTGTATTTTATGTTGAAACATGTTGAGATGACATTCAAAGATACTACTAGAAGGTGTAAGAGTAGAGAATTTTATGGAGAATCTAGATCTGTTTCATTGCAAAAGTCTATTTTTCCTGATTATTACACTGCTGATCATAATAACGGTAGCACTACAGTTCTTCCAACTTTTGACCCACTACAAAGTTCACCATCACTAAAGATAGATCTTGTCAATGATGATGAGGAGAGAAGCTCTGCATCAAAAAAGTACCTACACTATATGAAATGGATGTGGCAAGAGGGCTTTAATGCTAAAGTATTACATGCAATGAGATATGGAACTAAAAGATGTCTTCAGCTGCTTGAGACATGCCATATCTGCTACCAGTCTTGCTTGGCTGATGAAAGGCACTGCACAAGTTGCCACGTGACTTTTAGTATCTCTAATAGTTCCTTTGAACATTTTTCTGAGCATTCTGCACGTTGCATGGCAGATTTCAAAATACCAATTTCAATTCCTTTTCTTCTCATCAATATTCAGTTGTTGAAGGCACAGTTAGCGATTATTGAGGCTTCAATTCCAATGGAAGCCTTTCATCCTTTTTGGGATGATTGCTATCGCAAATCATGGGGTATCAAGTTGAAACATTCATCATCTGCAAGAGAAATTTTACAGAACCTAACTTTGTTAGAGAATGCAATAAAACCAGACTGCTTGTGCCCAGATTTCATTACAACAAACGAAGTATTAAACTCTGAAGTGGACTTGCTTGGTGCTAAAGCTATAGCTTCTAAACCAATTTCAGTTATACCATGGATTCCTGAGACAACTGCTGCTGTAGCTTTGAGACTTTTGGATCTCGATGCGTCCATCCCTTACATGCTTAAGCATGGGCTAGAACCTCTAGATGGCTCGGAAGCTGGAGATTTCCTTGTTCTTCCACGCTCGATTGCGGTAGCCACCGGGGGCCGAAATGGAGGCTTGCACGGAATTCTTGGCGAAGGCAACTCGAACATGGAGAGTTTCGGCACCAGTGAAAATAGCGATAAAATAGAAAACAGCTGTGAGTCATCAGACAGCTTGAGAGCTGCGGCCTGCTCGTGCAAAATGAATGCAGGATCGGCAAATACGCGCCGCGAAACTCGAGTGTTCGACGCCGGAGTGGAGAGCCTGCACCACAGAGGCGCACTTTGCCATGGCGAGGCTGTGGAAAGCAACGAATATCTGCGCTGGCAGGAAGCTGTGGATTCGTATCTGGATATCGAAGATTGCTCCAACGACAGAGATATCGCCTTTCCTGCGAAATGTGAGAATGGCGGCGAGAATTTCTCCTGTTAGCACTAAGTAGGCAGTTCAGTGCTGACTAATATCAGGAAATAGTTTATTCTTCAGATCACACAGCTTGATGATTTTTTTTTTTAATTTGTTTTAAAGTAGTATTTTTTTACTAGTATTAGTATAGTTTAGAGACTGAGAGCTGTCTTCACAGTTAGTAACACCCACCTTATTATGATATGATGAGCACTAAGCACATACTTTTTACATCTTTGGCTTCATGAAACGGGTTTTTCTAAACATATTTGGGTCCTTTTAATGGATCACGAAGTATTTTCCA

Network for GWHGAAEX012375

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00046.28	Homeobox	24	78	7.90E-13
PF02791.16	DDT	508	563	1.40E-17
PF15612.5	WHIM1	876	916	1.60E-07
PF15613.5	WSD	1024	1095	1.40E-10

Protein Sequence

>GWHPAAEX012375
MEFSDGRGGEPSQDASDNFPRQPKRKMKTPSQIDVLEKAYNVSSKLSEQMRLELAMKTDLSSREISMWFANRRFQRKQTHLLIESNREGEHPFPLQLTPSRGGSGFELAAHHFMDSSTNEEWLREKSSKMNLRIPAAPQVKRKTHVQQVMPQMKTSHHALEPSVITFLERKLGGRLRDDGPLIGIKFDPLPPGAFGSALCSSNERKQKPEQLIKTTEVESILKQNEGINKASSLFQQMKFGHSNNSTRRLPIGELGCTVHPNSVHNFSSKFPCFSSGKHHPQKKDLHPDCSLQDAQFTTDPVNVIVDKFVLTDTLANEFSCQVERLCKSEKVQTSIKVEDLCSLVARKKQCVKRKAKEKTQAYNEMHDLELDNGKEVEILEKHSLEGKLQHANQTDGCEKLLNNRNLENEEMRKPKELRCGAAAMEESANKTFIAHGNIQGNMKLIEDEQLELMKLAASKIGLHSINILDKDTLDKLHSFKDLLGPFPPESVSMKRPFAVSPWTDSEENVGNLLMVWKFLITFAGDLGLWPFTLDEFAQAFHDHDSRLLAELHVALLKYIIRDLEDARKIRAYGPHNCENNASDNPGNSSLNIVYGAHAWGFDMNLWKNRLNFLTWPEILRQVVLSAGFGPKLKKNAGFASCHGYKDGNSSDWSESLDKYAGGSNSVIVKEKDKSSSCDSSYPLIPGTLEFAVFQSFFLAGKDGLTPVEIADCIHKHRLCDLTTMESAHASIANILSKDVELFERVGLAIYRIKSCFRRDPSVVEKILEGLVDRADDIADSFDEYHLDLTREGLRNFNRNKGSTSLIKSMQNMSADDPELINESGFENVDQVSLFFLEDSEDGIVLSSKSDEPSDSIYEASSACGDMKGKEQFSVSWIQELSEGEYFLLSTEERLKVLVTLVDVVAEGNSFHAFIEERLKEAQIYKKKLMEKMRLNKKLLEESHGHIDDANYAYANASSFTKHALKCGPNFVNSSSAQTKYLWQEFSPSSSCIVPEKFEHTTTLSLSKLKLFIDKQAEMLHSYRFVPLGEDRRHNRYWQFSTSSSRNDPGSGRIFFESRDGFWRVIDSDEAFDAILAALDIHGIRESHLYFMLKHVEMTFKDTTRRCKSREFYGESRSVSLQKSIFPDYYTADHNNGSTTVLPTFDPLQSSPSLKIDLVNDDEERSSASKKYLHYMKWMWQEGFNAKVLHAMRYGTKRCLQLLETCHICYQSCLADERHCTSCHVTFSISNSSFEHFSEHSARCMADFKIPISIPFLLINIQLLKAQLAIIEASIPMEAFHPFWDDCYRKSWGIKLKHSSSAREILQNLTLLENAIKPDCLCPDFITTNEVLNSEVDLLGAKAIASKPISVIPWIPETTAAVALRLLDLDASIPYMLKHGLEPLDGSEAGDFLVLPRSIAVATGGRNGGLHGILGEGNSNMESFGTSENSDKIENSCESSDSLRAAACSCKMNAGSANTRRETRVFDAGVESLHHRGALCHGEAVESNEYLRWQEAVDSYLDIEDCSNDRDIAFPAKCENGGENFSC

Gene family

Gene family	subfamily
Transcription Factors Family	HB-other

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.700
SRP064423	SRR2545915	Juvenile tuber	4.230
SRP108465	SRR5643513	five period of Gastrodia elata	2.980
	SRR5643514	five period of Gastrodia elata	2.780
	SRR5643515	five period of Gastrodia elata	2.540
	SRR5643524	five period of Gastrodia elata	2.610
	SRR5643525	five period of Gastrodia elata	2.330
	SRR5643528	five period of Gastrodia elata	1.740
	SRR5643658	five period of Gastrodia elata	1.420
	SRR5643659	five period of Gastrodia elata	3.200
	SRR5643660	five period of Gastrodia elata	3.450
	SRR5643661	five period of Gastrodia elata	3.150
	SRR5643662	five period of Gastrodia elata	3.050
	SRR5643663	five period of Gastrodia elata	3.090
	SRR5643664	five period of Gastrodia elata	2.930
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.650
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.060
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.930
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.180
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.660
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.150
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.340
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.590
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.730
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.750
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.690
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.690
SRP279888	Gastro	Gastrodia elata tuber	4.05
	Juven	Juvenile tuber	5.70
	Mother_Gastro	Mother tuber of Gastrodia elata	4.66
	Mother_Juven	Mother tuber of Juvenile	5.82