Detail information of GWHGAAEX012381/evm.TU.scaffold_42.213
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|389862649|ref|YP_006364889.1| | 8.00E-72 | amino acid permease [Modestobacter marinus] |
| KOG | KOG1286 | 0 | Amino acid transporters |
| nr | gi|672106850|ref|XP_008781696.1| | 0 | PREDICTED: cationic amino acid transporter 5-like [Phoenix dactylifera] |
| Swissprot | tr|O64759|CAAT5_ARATH | 0 | Cationic amino acid transporter 5 |
| trEMBL | tr|A0A061FGY0|A0A061FGY0_THECC | 0 | Cationic amino acid transporter 8 {ECO:0000313|EMBL:EOY13684.1} |
| TAIR | AT2G34960 | 0 | cationic amino acid transporter 5 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000050 | 5612560 | 5628916 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012381
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13520.5 | AA_permease_2 | 95 | 488 | 6.30E-44 |
| PF13906.5 | AA_permease_C | 534 | 583 | 6.40E-16 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.750 |
| SRR2545915 | Juvenile tuber | 2.950 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.080 |
| SRR5643514 | five period of Gastrodia elata | 7.010 | |
| SRR5643515 | five period of Gastrodia elata | 7.170 | |
| SRR5643524 | five period of Gastrodia elata | 6.890 | |
| SRR5643525 | five period of Gastrodia elata | 6.190 | |
| SRR5643528 | five period of Gastrodia elata | 8.620 | |
| SRR5643658 | five period of Gastrodia elata | 7.730 | |
| SRR5643659 | five period of Gastrodia elata | 5.930 | |
| SRR5643660 | five period of Gastrodia elata | 7.200 | |
| SRR5643661 | five period of Gastrodia elata | 6.220 | |
| SRR5643662 | five period of Gastrodia elata | 7.380 | |
| SRR5643663 | five period of Gastrodia elata | 5.100 | |
| SRR5643664 | five period of Gastrodia elata | 5.010 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 7.040 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.660 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.020 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.000 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.310 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.620 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.660 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.690 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.630 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.490 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.210 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.210 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.76 |
| Juven | Juvenile tuber | 9.31 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 12.16 | |
| Mother_Juven | Mother tuber of Juvenile | 22.10 |