Gene detail

Detail information of GWHGAAEX012382/evm.TU.scaffold_42.214

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|390947371\|ref\|YP_006411131.1\|	6.00E-24	Retron-type reverse transcriptase [Alistipes finegoldii DSM 17242]
KOG	KOG1075	0	FOG: Reverse transcriptase
nr	gi\|743766918\|ref\|XP_010913705.1\|	0	PREDICTED: uncharacterized mitochondrial protein ymf40 [Elaeis guineensis]
Swissprot	tr\|P38456\|YMF11_MARPO	2.00E-27	Uncharacterized mitochondrial protein ymf11
trEMBL	tr\|J3NCW0\|J3NCW0_ORYBR	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:OB12G18180.1}
TAIR	AT1G30010	0	Intron maturase, type II family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000050	5631698	5634513	+

Transcript Sequence
>GWHTAAEX012382 CTTTGGCATGTAGAGAATGACATCTTCAAATTCTATACTTGATCTCATTGCTACGTTTTTATCCACCATTAACTTGATGAGTAAGATACTATTGCATGGGCCATCTCATTGAGCTATTTTGTGAAGCTCATTTTCGAGGGAGCCAGACTCTGTGGCAGTTGGTGAATGTGAGAATGTATGGGAGAATGGGTGAGGAGATAGTGGAATAGAGGGCTGAGAATAGACTCCGATCCATCGATTACCAAACAACATACTGCAAATTTGGTGCTGGGTTACCATTGTGGAAGTGATGAGTTGCGGTGGGCAAAGACGAATTGATTGAGATTATTTTGATGTGGTGGTAAGAGTATTGATATTCTCAATGGCCCCGGCGGGGGCAGCCTCGAGGATCCTTATCATTCCATCGGCCGCACCTCCATTTTCTTCTACCATTACTATTTCAGTAGCTTCTCACCTTCACTTCGCTTAAACCCTCAGTGAAAACCCTAATAAGGAAACTAGGCATGTTCCTTGTATCCCTCAGACAGCACATTCACCGCCGTCTCCGAAGCTCCCATAGTCTCTCCTTCCTGAATATTTCAACTCTCTCGAGCCACCCCCGCTGTCCCCTCCCCTTCACCCCTCTTCAACTCCATCCCCATCAAACCGAGGAGCAGAACCCTTACGACCTCATTCGCGAGGATCCCATTCAAGTCTGTTCAGATCTCTGGATCCGCTCCTTCTCCCGTTCCCATCTCCACCCCTCTTTCCCCAACCTCACCGGATTCCTCAAGAAGTTCGATCTCTGGATCCTCGCCTACCAGCGCTCTTGCGCTCATCAAACGGGCTCCTTTCCCCCGAAGAGCGCCATCCATTCCTCCCATCTTCGTTCCCTCCTCGCTCTCAGAAGCTTGGTTTTCTCCGGCCGTTACCTTTGGGGATCAGCCACTCACCTCATCCTTCGCTCGCCCAATGATTCCCCATCAACTCATCGCATTTCCAAGCGCAAGTTCATGGCTCTGCTCGAATCTTCTCCTCCTCCTTTTCAGGACCGTGTACTACAGGAACTTCTCCTCCTTGTGCTCGAACCAGTTTTTGAACCCCGATTCTCTCCAAGGTCTCACGCTTTTCGCCCGGGCCGCTCTCCCCACACGGTCATCCGCACTATTCGATCCAGCTTTCCTGGATATCTTTGGTTCCTCAAGGCCGATCTCACTGACATAGCTGATGATTTTACTCCGGAGATTATTGTGTCTTGTCTTGAGAAGGCTGTTGGAGATCGGAAAGTAGTTGGTCTGATAAAATCTGCTCTCAGAACTCCTGTCAGGGCTGTCTCTGGCAGTGACGACAAGGCGCTAGACAAGTTAACGAAGAGAAGGATGAAAAGGAAGATGCTTAGGAAGAGCAGAAAGAAGAAAGTTCTGAATGAGAATGAACCCAAGCCGGATCCGTACTGGCTCAGGACTTTCTTCAGCTTCGCACCACAAGAGGCTGACTGGGTTCCTAGTTACGGGCATTGTGGTATACTAAGCCCCTTACTTGCCAATATTTGCTTGAATGAATTGGACGGTTGGATCGAAGATAGGATTGTCAAGTACTTTCGGCCATCAAAGCTTGATTCGATATGGAAAAAATCGATGGATGATGGCTGCCATAATCCAGCTTGGCCTGAGTTTGTGCCTTCAAGTGGTCCAGAGAAAACAAGGAGAATGGATTATGTGAGGTACGGTTCTTATATACTGGTTGGGATCAGAGGACCAAGAGAGGATGCAGTTGAGTTAAGCAAGGATTTGATTGAGTTTTGTGAGACAAGATATGGGATGAGGCTGGAAAATTCTAAAATTGAGATTGAGCATATTACAAGGGGAATTCAGTTCTTGGATCATGTGATAAGCAGGCGAGTTATTTACCCAACACTGCATTATACTTCCACCGGCGGTAATGTTGTAACCAAGAAAGGCATCGGGACATTGCTTTCTGTCACTGCAAGCTTGAATCAATGCATTAGGCGGTTCAGGCAACTTGAGCTTGTCAAAGGAGACAAGGACCCAGATCCACTCCCTTGCTTACCTATGCTTTACTCGGGCCAAGCTCATACTAATTCCCAGATGAATAAGCTACTGGAGAGTATGGCTGATTGGTATAAATATGCAGATAATCGGAAGAAAATAGTTGGATTCTGTGCCTATGTAATAAGAAGCTCTATTGCTAAACTTTATGCTGCAAGGTATAGGCTGAAATCCCGAGCCAAAGTGTATAAAATTGCATCTCGTGATCTCAGCCTTCCACTGAGGGAGAGCACACGAAACTCAGCACCGGAGTATTCTGATCTCTTAAGAATGGGACTTGTTGATGCCATTGATGGTGTACAGTTTTCACACATGTCACTGATTCCATCATGCGATTATACACCATTCCCTAGGAATTGGGTGCCTGAGCATGAATGGGTTATACGTGAGTACATTAAACTTCAAGATCCAAAAGTTTTCTGTAAACTTCAGAAGTCTGTTAAACGTCATGAATTGGGAGTACCTCAGGATGACATGTCAAAAATTGTTTGGAACTTCAAGGTATGTGGAGTTTTTGGTAAGGACAACCATTGCAATAATAATCAACATTGTAAGCCAGGTGAAGCTGCTAAGCATTTGACCAATGGGGTATAGCTGGCATGCTTTTTCTTGCCATGACATCATCATATTCATATTTTAATCCACTCACATTTACTTATTTGTGTACAGTTAGCCATGAATTTGAAGTGGTTGTATAAAATTATCTCTCTTGGACAAGGACTCACTCATATTTGTTAAAAAGATGGAGATTTACAGTTTTGGTTTGTG

Network for GWHGAAEX012382

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00078.26	RVT_1	172	274	4.40E-07
PF01348.20	Intron_maturas2	528	579	8.50E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006397	Biological Process	mRNA processing

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.860
SRP064423	SRR2545915	Juvenile tuber	2.650
SRP108465	SRR5643513	five period of Gastrodia elata	2.860
	SRR5643514	five period of Gastrodia elata	2.680
	SRR5643515	five period of Gastrodia elata	3.050
	SRR5643524	five period of Gastrodia elata	2.740
	SRR5643525	five period of Gastrodia elata	2.210
	SRR5643528	five period of Gastrodia elata	1.500
	SRR5643658	five period of Gastrodia elata	1.470
	SRR5643659	five period of Gastrodia elata	4.400
	SRR5643660	five period of Gastrodia elata	3.370
	SRR5643661	five period of Gastrodia elata	4.950
	SRR5643662	five period of Gastrodia elata	3.910
	SRR5643663	five period of Gastrodia elata	3.460
	SRR5643664	five period of Gastrodia elata	3.500
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.490
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.560
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.010
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.050
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.930
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.230
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.130
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.920
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.090
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.590
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.230
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.230
SRP279888	Gastro	Gastrodia elata tuber	2.87
	Juven	Juvenile tuber	5.34
	Mother_Gastro	Mother tuber of Gastrodia elata	1.44
	Mother_Juven	Mother tuber of Juvenile	1.52