Detail information of GWHGAAEX012386/evm.TU.scaffold_42.222


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|672112095|ref|XP_008804038.1|1.22E-111PREDICTED: uncharacterized protein LOC103717432 isoform X1 [Phoenix dactylifera]
trEMBLtr|A0A061GPW7|A0A061GPW7_THECC2.00E-100Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein, putative {ECO:0000313|EMBL:EOY31157.1}
TAIRAT3G532702.00E-54Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005057406705750264+
Transcript Sequence

Network for GWHGAAEX012386

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module6

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF09808.8SNAPc_SNAP4361991.40E-45
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms127.080
SRR2545915Juvenile tuber122.650
SRP108465SRR5643513five period of Gastrodia elata5.650
SRR5643514five period of Gastrodia elata5.760
SRR5643515five period of Gastrodia elata5.590
SRR5643524five period of Gastrodia elata4.560
SRR5643525five period of Gastrodia elata40.240
SRR5643528five period of Gastrodia elata8.420
SRR5643658five period of Gastrodia elata8.430
SRR5643659five period of Gastrodia elata7.960
SRR5643660five period of Gastrodia elata49.490
SRR5643661five period of Gastrodia elata5.250
SRR5643662five period of Gastrodia elata5.040
SRR5643663five period of Gastrodia elata5.630
SRR5643664five period of Gastrodia elata6.010
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_148.910
SRR6049655Rhizomagastrodiae_C368-T10_good_152.980
SRR6049656Rhizomagastrodiae_C368-T07_good_147.150
SRR6049657Rhizomagastrodiae_C368-T07_good_160.420
SRR6049658Rhizomagastrodiae_C368-T04_good_171.490
SRR6049659Rhizomagastrodiae_C368-T04_good_169.400
SRR6049660Rhizomagastrodiae_C368-T01_good_160.760
SRR6049661Rhizomagastrodiae_C368-T04_good_168.160
SRR6049662Rhizomagastrodiae_C368-T01_good_140.120
SRR6049663Rhizomagastrodiae_C368-T01_good_148.500
SRR6049664Rhizomagastrodiae_C368-T10_good_135.760
SRR6049665Rhizomagastrodiae_C368-T10_good_135.760
SRP279888GastroGastrodia elata tuber 71.66
JuvenJuvenile tuber33.42
Mother_GastroMother tuber of Gastrodia elata 45.80
Mother_JuvenMother tuber of Juvenile 40.72