Detail information of GWHGAAEX012387/evm.TU.scaffold_42.224


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743770580|ref|XP_010915578.1|0PREDICTED: uncharacterized protein LOC105040648 [Elaeis guineensis]
trEMBLtr|K3YR78|K3YR78_SETIT0Uncharacterized protein {ECO:0000313|EnsemblPlants:Si016772m}
TAIRAT1G532100sodium/calcium exchanger family protein / calcium-binding EF hand family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005057714155794982+
Transcript Sequence

Network for GWHGAAEX012387

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01699.23Na_Ca_ex952722.20E-07
PF13499.5EF-hand_73143793.70E-07
PF01699.23Na_Ca_ex4375813.00E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0055085Biological Processtransmembrane transport
GO:0005509Molecular Functioncalcium ion binding
GO:0016021Cellular Componentintegral component of membrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms37.690
SRR2545915Juvenile tuber39.710
SRP108465SRR5643513five period of Gastrodia elata32.630
SRR5643514five period of Gastrodia elata29.560
SRR5643515five period of Gastrodia elata27.890
SRR5643524five period of Gastrodia elata32.260
SRR5643525five period of Gastrodia elata44.080
SRR5643528five period of Gastrodia elata51.270
SRR5643658five period of Gastrodia elata53.280
SRR5643659five period of Gastrodia elata26.370
SRR5643660five period of Gastrodia elata27.640
SRR5643661five period of Gastrodia elata30.740
SRR5643662five period of Gastrodia elata24.060
SRR5643663five period of Gastrodia elata28.740
SRR5643664five period of Gastrodia elata28.640
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_126.420
SRR6049655Rhizomagastrodiae_C368-T10_good_124.990
SRR6049656Rhizomagastrodiae_C368-T07_good_130.380
SRR6049657Rhizomagastrodiae_C368-T07_good_128.290
SRR6049658Rhizomagastrodiae_C368-T04_good_129.150
SRR6049659Rhizomagastrodiae_C368-T04_good_129.230
SRR6049660Rhizomagastrodiae_C368-T01_good_128.080
SRR6049661Rhizomagastrodiae_C368-T04_good_132.860
SRR6049662Rhizomagastrodiae_C368-T01_good_126.130
SRR6049663Rhizomagastrodiae_C368-T01_good_126.710
SRR6049664Rhizomagastrodiae_C368-T10_good_126.910
SRR6049665Rhizomagastrodiae_C368-T10_good_126.910
SRP279888GastroGastrodia elata tuber 34.98
JuvenJuvenile tuber30.54
Mother_GastroMother tuber of Gastrodia elata 38.16
Mother_JuvenMother tuber of Juvenile 37.92