Detail information of GWHGAAEX012389/evm.TU.scaffold_42.226


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|37528366|ref|NP_931711.1|6.00E-109malate dehydrogenase [Photorhabdus luminescens subsp. laumondii TTO1]
KOGKOG14940NAD-dependent malate dehydrogenase
nrgi|720074619|ref|XP_010279077.1|0PREDICTED: malate dehydrogenase, mitochondrial-like [Nelumbo nucifera]
Swissprottr|Q9ZP06|MDHM1_ARATH0Malate dehydrogenase 1, mitochondrial (Precursor)
trEMBLtr|F6HM78|F6HM78_VITVI0Malate dehydrogenase {ECO:0000256|RuleBase:RU003405}
TAIRAT3G150200Lactate/malate dehydrogenase family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005058132555815293+
Transcript Sequence

Network for GWHGAAEX012389

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00056.22Ldh_1_N361787.40E-48
PF02866.17Ldh_1_C1803456.40E-47
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00026MDH2 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of antibioticsmap01130
Carbon metabolismmap01200
Citrate cycle (TCA cycle)map00020
Pyruvate metabolismmap00620
Glyoxylate and dicarboxylate metabolismmap00630
Carbon fixation in photosynthetic organismsmap00710
Cysteine and methionine metabolismmap00270

Gene Ontology

GO term OntologyName
GO:0005975Biological Processcarbohydrate metabolic process
GO:0019752Biological Processcarboxylic acid metabolic process
GO:0055114Biological Processoxidation-reduction process
GO:0006108Biological Processmalate metabolic process
GO:0006099Biological Processtricarboxylic acid cycle
GO:0003824Molecular Functioncatalytic activity
GO:0016491Molecular Functionoxidoreductase activity
GO:0016616Molecular Functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0030060Molecular FunctionL-malate dehydrogenase activity
GO:0016615Molecular Functionmalate dehydrogenase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms36.300
SRR2545915Juvenile tuber60.730
SRP108465SRR5643513five period of Gastrodia elata154.660
SRR5643514five period of Gastrodia elata315.250
SRR5643515five period of Gastrodia elata192.920
SRR5643524five period of Gastrodia elata284.890
SRR5643525five period of Gastrodia elata119.360
SRR5643528five period of Gastrodia elata108.330
SRR5643658five period of Gastrodia elata107.880
SRR5643659five period of Gastrodia elata94.780
SRR5643660five period of Gastrodia elata89.940
SRR5643661five period of Gastrodia elata102.030
SRR5643662five period of Gastrodia elata82.610
SRR5643663five period of Gastrodia elata80.850
SRR5643664five period of Gastrodia elata74.770
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1208.830
SRR6049655Rhizomagastrodiae_C368-T10_good_1331.850
SRR6049656Rhizomagastrodiae_C368-T07_good_1254.380
SRR6049657Rhizomagastrodiae_C368-T07_good_1145.650
SRR6049658Rhizomagastrodiae_C368-T04_good_1166.150
SRR6049659Rhizomagastrodiae_C368-T04_good_1128.720
SRR6049660Rhizomagastrodiae_C368-T01_good_1149.510
SRR6049661Rhizomagastrodiae_C368-T04_good_1159.180
SRR6049662Rhizomagastrodiae_C368-T01_good_1352.530
SRR6049663Rhizomagastrodiae_C368-T01_good_1264.470
SRR6049664Rhizomagastrodiae_C368-T10_good_1398.060
SRR6049665Rhizomagastrodiae_C368-T10_good_1398.060
SRP279888GastroGastrodia elata tuber 94.35
JuvenJuvenile tuber90.18
Mother_GastroMother tuber of Gastrodia elata 88.02
Mother_JuvenMother tuber of Juvenile 57.23