Detail information of GWHGAAEX012391/evm.TU.scaffold_42.229
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|330507774|ref|YP_004384202.1| | 2.00E-20 | TPR-repeat-containing protein [Methanosaeta concilii GP6] |
| KOG | KOG1124 | 5.00E-159 | FOG: TPR repeat |
| nr | gi|672121194|ref|XP_008783888.1| | 0 | PREDICTED: TPR repeat-containing thioredoxin TTL1-like [Phoenix dactylifera] |
| Swissprot | tr|Q9MAH1|TTL1_ARATH | 0 | TPR repeat-containing thioredoxin TTL1 |
| trEMBL | tr|M0RK97|M0RK97_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P21720_001} |
| TAIR | AT2G42580 | 5.00E-159 | tetratricopetide-repeat thioredoxin-like 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000050 | 5877844 | 5905835 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012391
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13414.5 | TPR_11 | 209 | 250 | 1.90E-09 |
| PF13414.5 | TPR_11 | 447 | 488 | 2.60E-07 |
| PF00085.19 | Thioredoxin | 579 | 667 | 8.30E-15 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0045454 | Biological Process | cell redox homeostasis |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 31.760 |
| SRR2545915 | Juvenile tuber | 29.390 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 16.850 |
| SRR5643514 | five period of Gastrodia elata | 21.340 | |
| SRR5643515 | five period of Gastrodia elata | 13.720 | |
| SRR5643524 | five period of Gastrodia elata | 18.200 | |
| SRR5643525 | five period of Gastrodia elata | 17.790 | |
| SRR5643528 | five period of Gastrodia elata | 12.480 | |
| SRR5643658 | five period of Gastrodia elata | 28.730 | |
| SRR5643659 | five period of Gastrodia elata | 18.830 | |
| SRR5643660 | five period of Gastrodia elata | 19.290 | |
| SRR5643661 | five period of Gastrodia elata | 18.150 | |
| SRR5643662 | five period of Gastrodia elata | 24.440 | |
| SRR5643663 | five period of Gastrodia elata | 21.680 | |
| SRR5643664 | five period of Gastrodia elata | 24.210 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 17.580 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 16.240 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 21.080 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 20.380 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.040 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.950 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 15.020 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 16.040 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.710 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.380 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.340 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.340 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 18.53 |
| Juven | Juvenile tuber | 17.56 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.03 | |
| Mother_Juven | Mother tuber of Juvenile | 11.61 |