Detail information of GWHGAAEX012393/evm.TU.scaffold_427.1
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|158338215|ref|YP_001519392.1| | 3.00E-55 | urease subunit alpha [Acaryochloris marina MBIC11017] |
| nr | gi|743814666|ref|XP_010930124.1| | 1.78E-71 | PREDICTED: urease isoform X2 [Elaeis guineensis] |
| Swissprot | tr|B9GCH9|UREA_ORYSJ | 9.00E-66 | Urease |
| trEMBL | tr|M0XRW4|M0XRW4_HORVD | 3.00E-70 | Urease {ECO:0000256|RuleBase:RU000510} |
| TAIR | AT1G67550 | 8.00E-63 | urease |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000419 | 1639 | 6619 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012393
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01427 | URE | Metabolic pathways | map01100 |
| Microbial metabolism in diverse environments | map01120 | ||
| Purine metabolism | map00230 | ||
| Arginine biosynthesis | map00220 | ||
| Atrazine degradation | map00791 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006807 | Biological Process | nitrogen compound metabolic process |
| GO:0016151 | Molecular Function | nickel cation binding |
| GO:0016810 | Molecular Function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds |
| GO:0009039 | Molecular Function | urease activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 24.240 |
| SRR2545915 | Juvenile tuber | 24.590 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.360 |
| SRR5643514 | five period of Gastrodia elata | 9.740 | |
| SRR5643515 | five period of Gastrodia elata | 10.670 | |
| SRR5643524 | five period of Gastrodia elata | 11.310 | |
| SRR5643525 | five period of Gastrodia elata | 41.690 | |
| SRR5643528 | five period of Gastrodia elata | 22.850 | |
| SRR5643658 | five period of Gastrodia elata | 35.780 | |
| SRR5643659 | five period of Gastrodia elata | 16.180 | |
| SRR5643660 | five period of Gastrodia elata | 18.090 | |
| SRR5643661 | five period of Gastrodia elata | 17.780 | |
| SRR5643662 | five period of Gastrodia elata | 19.020 | |
| SRR5643663 | five period of Gastrodia elata | 16.620 | |
| SRR5643664 | five period of Gastrodia elata | 24.110 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 25.140 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 23.290 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 26.990 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 44.260 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 36.750 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 26.060 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 26.690 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 34.460 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 15.340 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 19.280 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 21.580 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 21.580 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 41.82 |
| Juven | Juvenile tuber | 33.56 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 32.43 | |
| Mother_Juven | Mother tuber of Juvenile | 30.92 |