Detail information of GWHGAAEX012398/evm.TU.scaffold_43.5
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|743901873|ref|XP_011044263.1| | 1.60E-32 | PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X2 [Populus euphratica] |
| Swissprot | tr|Q9FH54|EF114_ARATH | 1.00E-32 | Ethylene-responsive transcription factor ERF114 |
| trEMBL | tr|V4UNX2|V4UNX2_9ROSI | 1.00E-38 | Uncharacterized protein {ECO:0000313|EMBL:ESR41134.1} |
| TAIR | AT5G61890 | 5.00E-32 | Integrase-type DNA-binding superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000039 | 148665 | 149762 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012398
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00847.19 | AP2 | 111 | 160 | 1.20E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | AP2/ERF-ERF |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 13.020 |
| SRR2545915 | Juvenile tuber | 7.940 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.070 |
| SRR5643514 | five period of Gastrodia elata | 7.380 | |
| SRR5643515 | five period of Gastrodia elata | 8.650 | |
| SRR5643524 | five period of Gastrodia elata | 8.800 | |
| SRR5643525 | five period of Gastrodia elata | 12.430 | |
| SRR5643528 | five period of Gastrodia elata | 9.020 | |
| SRR5643658 | five period of Gastrodia elata | 25.830 | |
| SRR5643659 | five period of Gastrodia elata | 1.780 | |
| SRR5643660 | five period of Gastrodia elata | 3.910 | |
| SRR5643661 | five period of Gastrodia elata | 1.170 | |
| SRR5643662 | five period of Gastrodia elata | 1.740 | |
| SRR5643663 | five period of Gastrodia elata | 1.320 | |
| SRR5643664 | five period of Gastrodia elata | 3.410 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 14.930 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 13.160 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.510 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 21.030 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 38.800 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 58.630 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 18.730 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 37.530 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.670 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.460 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 12.530 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 12.530 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.77 |
| Juven | Juvenile tuber | 2.53 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 105.87 | |
| Mother_Juven | Mother tuber of Juvenile | 162.76 |