Detail information of GWHGAAEX012402/evm.TU.scaffold_43.14
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1868 | 1.00E-45 | Ubiquitin C-terminal hydrolase |
| nr | gi|672116583|ref|XP_008781459.1| | 5.26E-169 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 27 [Phoenix dactylifera] |
| Swissprot | tr|Q9FPS0|UBP27_ARATH | 1.00E-76 | Ubiquitin carboxyl-terminal hydrolase 27 |
| trEMBL | tr|W5BRA9|W5BRA9_WHEAT | 4.00E-134 | Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435} |
| TAIR | AT4G39370 | 1.00E-45 | ubiquitin-specific protease 27 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000039 | 483474 | 516398 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012402
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00443.28 | UCH | 75 | 557 | 5.00E-43 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | USP |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K11851 | USP30 | Mitophagy - animal | map04137 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006511 | Biological Process | ubiquitin-dependent protein catabolic process |
| GO:0016579 | Biological Process | protein deubiquitination |
| GO:0036459 | Molecular Function | thiol-dependent ubiquitinyl hydrolase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.600 |
| SRR2545915 | Juvenile tuber | 11.140 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.400 |
| SRR5643514 | five period of Gastrodia elata | 7.580 | |
| SRR5643515 | five period of Gastrodia elata | 6.660 | |
| SRR5643524 | five period of Gastrodia elata | 7.530 | |
| SRR5643525 | five period of Gastrodia elata | 10.260 | |
| SRR5643528 | five period of Gastrodia elata | 10.280 | |
| SRR5643658 | five period of Gastrodia elata | 8.520 | |
| SRR5643659 | five period of Gastrodia elata | 5.410 | |
| SRR5643660 | five period of Gastrodia elata | 5.510 | |
| SRR5643661 | five period of Gastrodia elata | 5.640 | |
| SRR5643662 | five period of Gastrodia elata | 5.270 | |
| SRR5643663 | five period of Gastrodia elata | 6.030 | |
| SRR5643664 | five period of Gastrodia elata | 5.640 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.350 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.370 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.450 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.160 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.350 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.290 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.800 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.930 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.320 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 9.150 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.220 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.220 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.08 |
| Juven | Juvenile tuber | 14.67 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.16 | |
| Mother_Juven | Mother tuber of Juvenile | 10.60 |