Detail information of GWHGAAEX012403/evm.TU.scaffold_43.15


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|694320822|ref|XP_009351585.1|3.46E-06PREDICTED: anthranilate synthase beta subunit 1, chloroplastic-like [Pyrus x bretschneideri]
Swissprottr|Q764B9|ASB2_ORYSJ5.00E-07Anthranilate synthase beta subunit 2, chloroplastic (Precursor)
trEMBLtr|M0TE33|M0TE33_MUSAM2.00E-06Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P02430_001}

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000039543896560947+
Transcript Sequence

Network for GWHGAAEX012403

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01658trpG Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of antibioticsmap01130
Biosynthesis of amino acidsmap01230
Tryptophan metabolismmap00380
Phenazine biosynthesismap00405
Quorum sensingmap02024
Biofilm formation - Pseudomonas aeruginosamap02025

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms1.090
SRR2545915Juvenile tuber2.460
SRP108465SRR5643513five period of Gastrodia elata2.050
SRR5643514five period of Gastrodia elata2.170
SRR5643515five period of Gastrodia elata2.670
SRR5643524five period of Gastrodia elata2.340
SRR5643525five period of Gastrodia elata0.660
SRR5643528five period of Gastrodia elata0.420
SRR5643658five period of Gastrodia elata0.470
SRR5643659five period of Gastrodia elata3.480
SRR5643660five period of Gastrodia elata4.200
SRR5643661five period of Gastrodia elata4.800
SRR5643662five period of Gastrodia elata4.260
SRR5643663five period of Gastrodia elata4.180
SRR5643664five period of Gastrodia elata3.900
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_12.050
SRR6049655Rhizomagastrodiae_C368-T10_good_11.640
SRR6049656Rhizomagastrodiae_C368-T07_good_11.890
SRR6049657Rhizomagastrodiae_C368-T07_good_12.780
SRR6049658Rhizomagastrodiae_C368-T04_good_14.430
SRR6049659Rhizomagastrodiae_C368-T04_good_15.660
SRR6049660Rhizomagastrodiae_C368-T01_good_14.070
SRR6049661Rhizomagastrodiae_C368-T04_good_14.580
SRR6049662Rhizomagastrodiae_C368-T01_good_15.170
SRR6049663Rhizomagastrodiae_C368-T01_good_14.160
SRR6049664Rhizomagastrodiae_C368-T10_good_11.660
SRR6049665Rhizomagastrodiae_C368-T10_good_11.660
SRP279888GastroGastrodia elata tuber 4.77
JuvenJuvenile tuber2.73
Mother_GastroMother tuber of Gastrodia elata 2.60
Mother_JuvenMother tuber of Juvenile 2.44