Detail information of GWHGAAEX012404/evm.TU.scaffold_43.16


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|307155323|ref|YP_003890707.1|4.00E-57glutamine amidotransferase of anthranilate synthase [Cyanothece sp. PCC 7822]
KOGKOG00263.00E-85Anthranilate synthase, beta chain
nrgi|238014836|gb|ACR38453.1|5.76E-90unknown [Zea mays]
Swissprottr|Q7XUS2|ASB1_ORYSJ1.00E-89Anthranilate synthase beta subunit 1, chloroplastic (Precursor)
trEMBLtr|C4JBA3|C4JBA3_MAIZE2.00E-90Uncharacterized protein {ECO:0000313|EMBL:ACR38453.1, ECO:0000313|EnsemblPlants:GRMZM2G325131_P03}
TAIRAT1G251553.00E-85Glutamine amidotransferase type 1 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000039562314569751+
Transcript Sequence

Network for GWHGAAEX012404

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00117.27GATase31529.60E-39
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01658trpG Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of antibioticsmap01130
Biosynthesis of amino acidsmap01230
Tryptophan metabolismmap00380
Phenazine biosynthesismap00405
Quorum sensingmap02024
Biofilm formation - Pseudomonas aeruginosamap02025

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms18.360
SRR2545915Juvenile tuber19.740
SRP108465SRR5643513five period of Gastrodia elata20.150
SRR5643514five period of Gastrodia elata20.420
SRR5643515five period of Gastrodia elata25.650
SRR5643524five period of Gastrodia elata23.370
SRR5643525five period of Gastrodia elata13.930
SRR5643528five period of Gastrodia elata9.390
SRR5643658five period of Gastrodia elata9.190
SRR5643659five period of Gastrodia elata31.220
SRR5643660five period of Gastrodia elata30.770
SRR5643661five period of Gastrodia elata34.160
SRR5643662five period of Gastrodia elata35.400
SRR5643663five period of Gastrodia elata37.650
SRR5643664five period of Gastrodia elata28.590
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_130.610
SRR6049655Rhizomagastrodiae_C368-T10_good_117.520
SRR6049656Rhizomagastrodiae_C368-T07_good_135.720
SRR6049657Rhizomagastrodiae_C368-T07_good_126.420
SRR6049658Rhizomagastrodiae_C368-T04_good_137.170
SRR6049659Rhizomagastrodiae_C368-T04_good_141.110
SRR6049660Rhizomagastrodiae_C368-T01_good_138.580
SRR6049661Rhizomagastrodiae_C368-T04_good_137.120
SRR6049662Rhizomagastrodiae_C368-T01_good_139.780
SRR6049663Rhizomagastrodiae_C368-T01_good_140.620
SRR6049664Rhizomagastrodiae_C368-T10_good_122.410
SRR6049665Rhizomagastrodiae_C368-T10_good_122.410
SRP279888GastroGastrodia elata tuber 39.41
JuvenJuvenile tuber19.98
Mother_GastroMother tuber of Gastrodia elata 20.19
Mother_JuvenMother tuber of Juvenile 10.91