Gene detail

Detail information of GWHGAAEX012407/evm.TU.scaffold_43.19

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|189502232\|ref\|YP_001957949.1\|	2.00E-12	hypothetical protein Aasi_0849 [Candidatus Amoebophilus asiaticus 5a2]
nr	gi\|695057283\|ref\|XP_009416906.1\|	2.85E-153	PREDICTED: U-box domain-containing protein 26 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9LT79\|PUB25_ARATH	2.00E-110	U-box domain-containing protein 25
trEMBL	tr\|M7ZSY1\|M7ZSY1_TRIUA	4.00E-142	Uncharacterized protein {ECO:0000313\|EnsemblPlants:TRIUR3_29664-P1}
TAIR	AT3G19380	2.00E-110	plant U-box 25

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000039	680418	682729	-

Transcript Sequence
>GWHTAAEX012407 CTCGATAGTACCATTGGCAAATGTGACCCATGATGTTGGATTGGTACCTCTAATCCAATGTAAAGAGTCATAGTACCTATAATATTTGTGTAGTTACACTAACCCAAGATCCCGAGATCGAGGCGTTGCAGAAATTAAACATTTAATCATTTAGAAAGTAGGAGCTGGGGGACAATAAAAGCCCGGGGTTGGAAGAAAGGATGACAAAAGAACGGTCAAGATGGAACAATATTGTTTTGCTCGCCCGTTCAATTTAATTGGACGATCGTAATCGTTTCCCGAAACGGTGCTTGTCCTCAGTTCTTCCACCGGCGGAAATGCTCGGCCGCGACCGGAAATGGGAGGGAGATCGTTTTTCCAAGGCAGAAGAAAACAAAGCGCATGTGATGCGCTGCCCCGCCCTCGCCCTGCAGTAACAACTAGTCAACCTCCCCCCTATTCCTGTCTCCCGGTGGCAACCCCTTTCTCCCTCCCTTCTTCCGTGGGCTACTTTCGGGAATGCCGCGCACAAATTATATTAAAATTGAGAAAACAAAACCTAAAACCCGCACGTGTGGACGATTCCCCCGTATCCCCATCACATTAAGAGCGCGCGCGCACTGCCCTCCCCCCAGCACCAGCACCAGCAGCAGCGGAAAGGAGAATGAGGAGAGGAAGGCAATCTCCGGCGGTCTCAGCACCGTTGGATCTGGCGGGAGTTCAGATTCCTTGGCACTTTCGGTGCCCGATTTCGCTGGAGCTTATGCGGGATCCGGTGACCGTGAGCACGGGCCAGACTTACGACCGGGCGAGCATCGAGTCGTGGCTGGCGATGGGGAACAGCACGTGCCCTGTGACCAGGGTGCCTCTGGCCGGCTCCACCCTCATCCCCAACCACACCCTGCGCCGTCTGATCCAGGACTGGTGCGTGGCCCACCGCTCCCTCGGCGTAGAGCGCATCCCCACCCCCAGGCAGCCGGTCGACCCCGCCGCCGTCCGCGCCCTGCTCGCCCAGGCTTCGACCGACGCCCTGCCCGATGCCAGGGTCGCCGCCCTCCGCCGCCTCCGCTCGCTCGCCCGCGAGTCCGAGAAGGACCGGTCCGCGGTGTCCACACGCGAGGCGCGCGAGGCCCTCGTTGAGATCGCCTTCACCGGTCCCCCCGACGTGGCGGCCGCAGCGCTGGAGGCGGTGGCGGCGCTCCCTCCCGCAGAAACGGCGGTGGCTGCGAGGCCGGAGCGGGTGGCGCGGCTGGCGGCTGTGCTGGGAGGGCACCAGTCGATCGAGGCGCGAATTGGTGCGGCGGCGTTGGTGGAGGGGATGCGCCCGGCGGAGGCGCGGGGCGGGGTGGTCGAAGGGATGGTCGCGCTGGTGGAAGAGAGGGGGAATTCGCGGGCGGTGAGGGCGGGGGTGAGAGGGCTGCTCTCGCTCTGCCTGGCGAAGGAGAACAGGGGAAGGGCGGTGGCAGCTGGGGCAGCTGAGGCGGTGCTGCGGGCCATGGGTGAGATGGGAGGGGGCGAGAGGAAGGGGGACTTGGAGCGGGCGCTGGCGACGGTGGAGCTGCTGTGCAGGGGGGAGGGAGGGAGGGAGGCGGTGGCGCGGGCACAGGGGTCGACCGCGACCATCGTGAGGGCCATGGCCGGGAAGGCGACGGAGAGGGCGGCGGAGCATGCGGCCGGGGCGCTGGCCGCCGTGCTGGCCGGCTCCGAGGGAATGCAGAAGGAAGCCGTGGCTTCCGGAGTTCTCCCGCAGTTGCTGCTCATGGTGCAGAGCGGCTGCTCCGAGAGGGCCAGGCGGAAGGCGCAGGTGCTGCTAAAGATGCTACGCCCGGCGTGGCCTCCCTTGCTGGATTCCTTTGCGTATTCCGACGATTTTCTGCAGCAGTTCTGAAGAACATCAAACGGGTAAATTTGGGGGATGATAGTGCTGCAGCAGCAGCAGCCGGTGAGGGTGATCTGTTTATTAAAAATAGAAGGACATTTCGGTCGTTTTTATTTTAAAGTTTTTCCTTTACAATTTCATAAGAAGAGGGGAGGCTTTTTGGGCTTTTGATGCTTCGTCGGAAGAGCGAGAGCTGCGGGTGGGAGATTAATTCAGGATCGTCAGCTTCTGTGTATGTATGAAGGAAGGATTTTGTCTTTATAAGAGAAGAGAAATTAATGATATATATTTATCCATAGGAGCAACGATTCATCCGCACAGCATTTCTTCCTCTCCTTGTGAATCATCTATACTTTAAAAAAAAGTACTCTTTGTGTCAGTCAATATAATTTTAAGAATTAGTTTGTTCATTTTTATTTGCATTAATTTTCATAAATCAAAAGTATTTATTGAG

Network for GWHGAAEX012407

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module13

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04564.14	U-box	21	92	4.10E-21

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016567	Biological Process	protein ubiquitination
GO:0004842	Molecular Function	ubiquitin-protein transferase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.360
SRP064423	SRR2545915	Juvenile tuber	5.550
SRP108465	SRR5643513	five period of Gastrodia elata	8.240
	SRR5643514	five period of Gastrodia elata	5.420
	SRR5643515	five period of Gastrodia elata	32.500
	SRR5643524	five period of Gastrodia elata	3.370
	SRR5643525	five period of Gastrodia elata	17.640
	SRR5643528	five period of Gastrodia elata	23.780
	SRR5643658	five period of Gastrodia elata	7.980
	SRR5643659	five period of Gastrodia elata	31.930
	SRR5643660	five period of Gastrodia elata	9.790
	SRR5643661	five period of Gastrodia elata	29.540
	SRR5643662	five period of Gastrodia elata	23.990
	SRR5643663	five period of Gastrodia elata	18.870
	SRR5643664	five period of Gastrodia elata	53.570
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	54.470
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	22.110
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	33.580
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	38.540
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	33.500
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	34.330
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	92.810
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	42.890
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	31.430
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	84.610
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	36.010
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	36.010
SRP279888	Gastro	Gastrodia elata tuber	1.64
	Juven	Juvenile tuber	0.25
	Mother_Gastro	Mother tuber of Gastrodia elata	6.32
	Mother_Juven	Mother tuber of Juvenile	2.07