Gene detail

Detail information of GWHGAAEX012412/evm.TU.scaffold_43.27

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2347	Sec5 subunit of exocyst complex
nr	gi\|672121703\|ref\|XP_008784153.1\|	PREDICTED: exocyst complex component SEC5A-like isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q8S3U9\|SEC5A_ARATH	Exocyst complex component SEC5A
trEMBL	tr\|M0TA32\|M0TA32_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P25360_001}
TAIR	AT1G21170	Exocyst complex component SEC5

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000039	980018	1044488	+

Transcript Sequence
>GWHTAAEX012412 TTAACATTAAACTATAAGGCTGAATTCCTAAAATCTAGATTTCAAGTTTGCTTTTTTGGACGATTGGTCGCCAGACTCCGTCCTTCTCCTTTGTTTCCATACTTCATTTCTCTCGTTCAAAACTGTTCCACGTTTCCTTTCCTCTTTCTTCAATATTCAAGTCACCGCAGATCCAAACGTAGGTCGACTGGAAAGATTGCCCCTACGCCAATGGCAAGCGATAGCGACCTCGACGAGGACGAGCTCCTCCAGATGGCTCTAAAGGAGCAGTCGGAGCGAAACATTAACTACCACAAACAGTCGAAGCCTTCCAAGCCCGTCGTGAATCTCGTTCAAACCCCACCCCCACCTCCTTTTATTCTAAAAAGCAATTCGACTGCTATGCCTGACTCTAGAGCAAGATCGAATTCCAAGGGGAAGCGTAGGAATTCCAAGGGCGGTGCATACGATGAAGATGACTCGGAGGTCGAACTATTGAGTATCTCATCGGGCGATGAGGAGTCTATAAGGGACTTGGGAGTTTCGCAGAAGGTGCGGCCACCGAGGAGGGGCTCGATTGATGATGATCGCGTTGATGATGGCGGTGAGCCTCGGAGTTGGAAGCGGGTCAATGAGTCGGAGCTTGCTCGCAGGGTTCGTGAATTGCGTGAAACCAGATCAACTCCTCAAACTATTGATACAAAACCAATAGGGCGAAAGGGGCTTGCTAACTTACAGTCACTGCCTCGTGGAGTGGAAGTTTTAGATCCACTAGGCTTAGGGGTAATAGATAACACCTCTCTTAGGCTAATTATTGATGGTCTAGAAGAAAAACCAGAGCCTGTGGACCCTAAAACTCGAGAAAAGATGATGTACACTTCTCCAAATTTTGATCCCAAACTTTTTCTCACACGAGTCCACCAAGAGACTAGCGCTGCTGATTTAGAATCTGGTGCTCTCACATTGAAAAGTGATCTTAAAGGATGGACTCAACAGAAAAAACAACTAGTGAAAGAGAACTTTGATTGCTTTGTGTCTTGCAAGACTACTATTGATGATATTGAATCTAAATTAAGGCAAATTGAGGAGGATCCTGAAGGTTCTGGCACAAGTCGTTTGTATGAATCTACCCATAGAATAACTGAACTTGCAAATGGTGCTTTCCAGCCTCTATTTGAGAGACAGGTACAAGCTGAGAAAATTAGATCTGTTCAAGGAATGCTGCAAAGATTCCGTACATTGTTCAATCTGCCAAGTTTAATTCAGGGGAGCGTAAGCAAGGGCGAATATGATTTAGCTGTTCGGGAATATAGAAAAGCGAAGTCTATTGTTCTTCCTTCTCATGTGGGCATTTTAAAACGGGTATTGGAGGAAGTGGAGAGAGTGATGTGCGAATTTAAGAGCATGCTTTATAAATCAATGGAAGAATCGCAACTTGATCTTGCTGAGCTTGAGAAAACAGTGCGGTTATTATTAGAGCTAGAGCCTGATTCAGATCCTGTGTGGCATTATCTCAACATTCAGAATCATAGGGTACGAGGATTATTTGAAAAATGCACCATTGATTATGAATCTCAAATGGAACTCTTGCATAATGAGATTCAAGAGAGAGTGCAATCTGATGCAAGATGGAGGCAGATCCAACAGGAGTCAAATAAGTCTTTAGGCGTTGATGCACCCAACTGGGACTCACTAGCAGTAGACTCACAACAGTTGTATATGTCGGGTGAAGAAGTTGATGCTTTAAGAGGAAGATATATTAGCAGGCTAACTGCTGTTCTCATCCATCATATTCCTGCATTTTGGAGGCTTGCTTTGTCCGTTTTCAGTGGAAAATTTGTGAAGGGGACTGCGGGCAATGTTCATTTTGATTCTGACTCAAATGCCAAACATGCACAAAGTAGGAGTGAAGAGAAAGCTACTGATGTGAAATTTTCTAGTCATTCTCTTGAGGAAGTTGCAACTATGGTTCATGGTACCATAAATGCTTATGAGGCCAAGGTTCTCAATACATTTCGTGAGTTTGAAGAATCAAATATTCTTAAGACATACATGAGTGATTCTATCAAAGAAATTGCTAAAGCATGTCTGGCTCTTGAGGGAAAAGAGTTCTGTCCTTCAATTGCTGTCAAAACTTTGCGAGCCCTTCATTTCGAAATTACAAAGGTTCATGTACTTAGACTCTGCTCATGGATGCGAGTGGCAAGTGAAGAAATAGCGAAGGAAGAAATGTGGATACCTTTATCCACTCTACAGAGGAACAAATCTCCATATTCCATTTCTTATCTACCTATAGCATTTCGAGAAATGACAAGTTCAGCCATGGATCGAATACAAATCATGATTCAAAATCTAACAACAGAGACGACCAAGTCAGATGACATGCTAGACCAAATTCAAGAAATTCAAGATTCTGTCAGAATTGGGTTCTTGAACTGCTTCCTGGACTTTGCTGGTTATCTTGAACGAATTGGAACTGAATTATCTCAAACAAATTCAAATAAAGAAGAGTATCATTTCCAGAAAGATTTTCTGTATGGATTTGAAGGTGAATTACATGGGTTTTGTTCAGGTGGTGTTGTTGCTGATTCTCACAAAAGGCTGTTAATAGTTCTAAGTAATATTGGGTATTGCAAAGATGAACTTGTTCGTGAGTTGTATGCAAAATACATGCATATATGGATGCCATATAGGGAAAGAAATGAACAAAATAATGATGTTCATGATCTAGTTTCATCATTTTCTGCACTTGAGGATAAGGTTCTGGAAAATTATACATATGCTAAGTCGAACTTGATTAGAACTGCTGCTTTGAACTACCTGTTGGATTCTGGAATTCAATGGGGATCTGCACCTTCAGTCAAGGGCGTTCGGGATGCTACCATAGAATTAATACACTGTTTAGTTGCTGTGTATGCAGAGGTATTCTCAGGCGCCAAACCGTTGCTGGAGAAAACGATGGGCATTTTGGTGGAAGGCTTGATCGACACATTTATTAGCCTTTCTCATGAAAACAGGGCCAAGCATTTGAAGTCTCTGGACATGAATGGTTTCTGCCAACTCATGCTCGAGCTAGAGTATATCGAAACTGTTCTCCACTCGTATTTCTCGTCGGCGGCGCATGAGTCCTTAAAATCTCTGCAGGGGCTCTTACTGGAGAAAGGCTGTGAGGGAACATCCGAATCTGCTGACAATCCTGGAGGCCACCACCGGCGCCCCACCAAGGGCAGCGAAGAAGCTATTTCCGATGATAGGCAGCAGGCTTCTGCTGTTTCCCCTGATGATTTGATCGCATTGGCACAGCAGTATAGCTCGGAATTGCTCGAAGGTGAACTCGAGAGGACCCGCCTCAACATATCGTGTTTCATGGAGGCATCCCTCAGACCTAATTCTGTTCCGGCAACACTTCAGAAGTCTTCTTCTGCTGCTTATTCTGGTTTTCAGAAGCCTGTTTCTTCACCGCATTACAGGAGGCAACAGACTGTGAGCTCTCCAAGTTTCTCAAGACACAGGCGGAGATGAGATAACAAGCGGGTTCTGGCTATATATACTTGTTTATCATTTTGAAAATCCTGTGCCGTTTGTGCAAAATTATCCTATTTTTGCGTTTGTAAATTGTAATTGTTGGCGAGAATGAGCTTTATGTTTATTTGTAAGGATCATTTTTGATGATTTGCTTCCATTGATTTTGGTAAAAGGATTTTAGTTTTGCCGCGTTAAGCTTTGGGTTTATTTTATGACAGCCGTAGGATGGTTTTTTGAAATTTTTGGAATGTTTACTTTTTTGTTGTTTTATGCTGAATATTTATTTTTGGCTTAAATTTTAGATAGAAAAATTTGAGGGTTTTTGTTCTTTTTTGAAATCAGGTGAACATCAGATATGAAATAATTGTGTGGTCGGTGGGATTTGAAC

Network for GWHGAAEX012412

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF15469.5	Sec5	254	431	1.00E-45

Protein Sequence

>GWHPAAEX012412
MASDSDLDEDELLQMALKEQSERNINYHKQSKPSKPVVNLVQTPPPPPFILKSNSTAMPDSRARSNSKGKRRNSKGGAYDEDDSEVELLSISSGDEESIRDLGVSQKVRPPRRGSIDDDRVDDGGEPRSWKRVNESELARRVRELRETRSTPQTIDTKPIGRKGLANLQSLPRGVEVLDPLGLGVIDNTSLRLIIDGLEEKPEPVDPKTREKMMYTSPNFDPKLFLTRVHQETSAADLESGALTLKSDLKGWTQQKKQLVKENFDCFVSCKTTIDDIESKLRQIEEDPEGSGTSRLYESTHRITELANGAFQPLFERQVQAEKIRSVQGMLQRFRTLFNLPSLIQGSVSKGEYDLAVREYRKAKSIVLPSHVGILKRVLEEVERVMCEFKSMLYKSMEESQLDLAELEKTVRLLLELEPDSDPVWHYLNIQNHRVRGLFEKCTIDYESQMELLHNEIQERVQSDARWRQIQQESNKSLGVDAPNWDSLAVDSQQLYMSGEEVDALRGRYISRLTAVLIHHIPAFWRLALSVFSGKFVKGTAGNVHFDSDSNAKHAQSRSEEKATDVKFSSHSLEEVATMVHGTINAYEAKVLNTFREFEESNILKTYMSDSIKEIAKACLALEGKEFCPSIAVKTLRALHFEITKVHVLRLCSWMRVASEEIAKEEMWIPLSTLQRNKSPYSISYLPIAFREMTSSAMDRIQIMIQNLTTETTKSDDMLDQIQEIQDSVRIGFLNCFLDFAGYLERIGTELSQTNSNKEEYHFQKDFLYGFEGELHGFCSGGVVADSHKRLLIVLSNIGYCKDELVRELYAKYMHIWMPYRERNEQNNDVHDLVSSFSALEDKVLENYTYAKSNLIRTAALNYLLDSGIQWGSAPSVKGVRDATIELIHCLVAVYAEVFSGAKPLLEKTMGILVEGLIDTFISLSHENRAKHLKSLDMNGFCQLMLELEYIETVLHSYFSSAAHESLKSLQGLLLEKGCEGTSESADNPGGHHRRPTKGSEEAISDDRQQASAVSPDDLIALAQQYSSELLEGELERTRLNISCFMEASLRPNSVPATLQKSSSAAYSGFQKPVSSPHYRRQQTVSSPSFSRHRRR

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K17637	EXOC2, SEC5	Ras signaling pathway	map04014

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	27.680
SRP064423	SRR2545915	Juvenile tuber	25.300
SRP108465	SRR5643513	five period of Gastrodia elata	22.230
	SRR5643514	five period of Gastrodia elata	26.790
	SRR5643515	five period of Gastrodia elata	25.820
	SRR5643524	five period of Gastrodia elata	27.210
	SRR5643525	five period of Gastrodia elata	18.430
	SRR5643528	five period of Gastrodia elata	22.640
	SRR5643658	five period of Gastrodia elata	18.010
	SRR5643659	five period of Gastrodia elata	22.460
	SRR5643660	five period of Gastrodia elata	21.720
	SRR5643661	five period of Gastrodia elata	21.100
	SRR5643662	five period of Gastrodia elata	19.560
	SRR5643663	five period of Gastrodia elata	22.300
	SRR5643664	five period of Gastrodia elata	19.860
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	23.840
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	21.730
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	22.150
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	20.740
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	21.020
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	21.730
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	19.870
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	17.450
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	24.150
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	23.450
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	30.720
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	30.720
SRP279888	Gastro	Gastrodia elata tuber	20.78
	Juven	Juvenile tuber	21.88
	Mother_Gastro	Mother tuber of Gastrodia elata	29.31
	Mother_Juven	Mother tuber of Juvenile	34.13