Gene detail

Detail information of GWHGAAEX012419/evm.TU.scaffold_43.38

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|347754681\|ref\|YP_004862245.1\|	1.00E-24	protein kinase domain-containing protein [Candidatus Chloracidobacterium thermophilum B]
KOG	KOG0583	0	Serine/threonine protein kinase
nr	gi\|672116670\|ref\|XP_008781505.1\|	0	PREDICTED: serine/threonine-protein kinase SAPK7 [Phoenix dactylifera]
Swissprot	tr\|Q7XQP4\|SAPK7_ORYSJ	0	Serine/threonine-protein kinase SAPK7
trEMBL	tr\|A0A059PZT4\|A0A059PZT4_9POAL	0	Uncharacterized protein {ECO:0000313\|EMBL:AGT16423.1}
TAIR	AT5G63650	0	SNF1-related protein kinase 2.5

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000039	1368302	1374572	+

Transcript Sequence
>GWHTAAEX012419 TTATAATTAACAATCTTTAGGTGTTCAATGAATGCAAATAATTATTTTTGCTATGATTTTCATGGTGCTGTGTATCGCAAATCTCTTCTTGCAAATAGTTGCAAACTCGCAATTTTAAAATACAATTGAAATCCGCATCCCAAACGCAATAAATATGAGGAATTTCTCCGCACATTCTCCACAAACTCTCAATCTCCTCTAATTCACTCTTCTACTTTTCAGCTCAGTTCAACAATTCCTCTTCTAATCGACCTTAAATTTTCTGAAAGTTCACTCCTTTCTTGAATTTTTGGCTTTCAGCAGGCCGATCGAGGGAGATTGATTTTTTTTCTTATTCGAAATTGAATCGCGCGCAGAGAGAGAGACTAGTTATGGATAAATATGATGTGGTGAAGGAGCTTGGCTCTGGTAATTTCGGAGTAGCGAGGCTTATGCGGAATAAGGAAACGAAGGAGCTCGTCGCCATGAAGTATATTCCCAGAGGCAAGAAGATCGGCCAAAGTGTAGCGAGGGAGATTATCAACCACCTCTCTCTCAGGCATCCCAACATAATTCGTTTCAAGGAGGTAGTTCTGACTTCAACGCATCTTGTGATCATTATGGAGTATGCCGCCGGAGGCGAGCTGTTCGAGCGGATATGCAACGCCGGCAGATTCAGTGAAGACGAAGCAAGATATTTCTTTCAGCAGCTTATTTCTGGAGTGAGCTATTGCCACTTCATGCAAATATGCCACCGTGATCTGAAGCTGGAGAACACGCTTCTGGACGGAAACCCTGCGCCGATGCTAAAAATTTGCGATTTTGGATACTCCAAGTCGCTGCTTCTGCACTCGAGGCCGAAGTCAACAGTAGGAACGCCGCCGTACATCGCGCCGGAGGTTCTCTCTCGCCGGGAGTATGACGGCAAGCTTGCAGATGTGTGGTCGTGCGGAGTGACTCTTTATGTTATGTTGGTGGGAGGCTACCCATTCGAAGATCCGAATGATCCCAAAGATTTTAGAAAAACTATAGGGAGAATCATGTCAGCACAATACAAAATACCTGATCATGTCCACATCTCTCAAGATTGCAGACAACTCCTTTCATGCATATTTGTTCCCAATCCTAACAAGAGGATGACTATAAAGGAGATTAGAAAATTGCCGTGGTTCCTGAAGAACCTGCCAAGGGAGCTAACTGAAACTGCCCAAGCAGTGTATTACAACAGGGGCAGCGGCGCACCGATCTACTCTCGCCAATGCATAGAGGATATCATGGACATAGTTAATGAAGCCAAGAATATTCCTCTGCCGACCGATCCTGTTCCAAGTTGGGCGGAAGAAGATGACCAAGAGGAGGACGAATATGATAGACATGTCAAGGAAGTTCAAGCTAGCGCTGCTCAATATCAAATTAATTGTTAGAAGAACCAAAGCTTTGTCTTCTCCAATTATGAATTCTATTATAGAATTGAGTTCAAACGCCTTTATTTGCATGCCAATAAAATTGAAAATTCTGCCCCAACAATTTTTTTTAAATTATTATTAGTCATTAATCATAATTTTAATTATAATTTTAGCTAATGAATCTTATTTATTATAAATTAAT

Network for GWHGAAEX012419

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module3

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	4	260	6.20E-69

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_OST1L

KEGG pathway

KO	Enzyme	pathway	mapID
K14498	SNRK2	MAPK signaling pathway - plant	map04016
K14498	SNRK2	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	86.170
SRP064423	SRR2545915	Juvenile tuber	90.470
SRP108465	SRR5643513	five period of Gastrodia elata	35.810
	SRR5643514	five period of Gastrodia elata	55.260
	SRR5643515	five period of Gastrodia elata	38.550
	SRR5643524	five period of Gastrodia elata	61.240
	SRR5643525	five period of Gastrodia elata	23.540
	SRR5643528	five period of Gastrodia elata	29.410
	SRR5643658	five period of Gastrodia elata	14.270
	SRR5643659	five period of Gastrodia elata	103.090
	SRR5643660	five period of Gastrodia elata	100.200
	SRR5643661	five period of Gastrodia elata	98.800
	SRR5643662	five period of Gastrodia elata	74.000
	SRR5643663	five period of Gastrodia elata	77.900
	SRR5643664	five period of Gastrodia elata	63.590
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	31.860
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	45.240
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	32.950
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	27.260
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	24.350
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	23.810
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	27.890
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	29.800
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	31.630
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	34.910
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	37.300
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	37.300
SRP279888	Gastro	Gastrodia elata tuber	37.38
	Juven	Juvenile tuber	76.39
	Mother_Gastro	Mother tuber of Gastrodia elata	31.22
	Mother_Juven	Mother tuber of Juvenile	27.12