Gene detail

Detail information of GWHGAAEX012421/evm.TU.scaffold_43.40

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1981	SOK1 kinase belonging to the STE20/SPS1/GC kinase family
nr	gi\|743816257\|ref\|XP_010930596.1\|	PREDICTED: uncharacterized protein LOC105051720 [Elaeis guineensis]
trEMBL	tr\|M0SF72\|M0SF72_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P16560_001}
TAIR	AT1G22930	T-complex protein 11

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000039	1377756	1404954	-

Transcript Sequence
>GWHTAAEX012421 GTATGGAAAATAAATTGGGAAACCTTACGGTTACCCAACCTTAATCCAAAACGCGTTAGCGAAATAACATTATCCTTAATTATATATATTAAAGTAGAGATTTTTCAGTTTAGATATTTAATACTTAATGTGTATATTCATGAGCGTTGAGAGGAGGAAGGCGGAATTGGGAGTGGTACCATGGAAACGTGCTGCTTTTCCTTTTCGTGAACCATTTTATCTTTCCTCTTCTTGTTATCCTTTCACCTATTTCTCTCAACTGCTCGTTTGCTTTATCATTTTTTTTGCGAGATCGATTAGATGGAGGCTGCGAATGGTGTAGATATGCCGGAGGCGGCGCGCGCAACCGCGATCGCTTTCGATTTTTCGGCGGGGGAGCCTTCCTCAACGCCGCCTAAGATGCCGCGGAAGATCCGGAAGAGGCTGTTGGAGTGCAGGAGCAGCCCGCCGTCGAGCGTGGAGGAGATCGAGGCCAAGCTCAAGGAGGCCGATCTCCGCAGGCGGCAATTCCATGAGTGGTTGTCAAGCAAAGCTCGGCCAAAACAAAGGAGTCCTTCGTGGTCATCTCAACAAGAACCTGGTCAGCGGCTGGAGGCAAAGCTTAATGCAGCTGAGCAAAAAAGGTTATTCCTTTTGGAAAATGCACAAATGCGTTTGGCTAGGCTGGATGAGCTAAGGCAAGCTGCTAAATGTTGTGTAGAAATGCGCTTTGAGAAGCAACGTGAAGAGTTGGGTTCAAGGGTAGAATATCGAGTGCAGCAAGCTGAGGCAAATCGAATGCAACTTTATAAAGCTCATATGCAAAAATGTGCTGCAGCTCAGGAGAGAAAATCAAGATATTTGTTGCAGAGAACTTTGCAGGAGAATAAATACAAAGAACGCATTCTTTCAGCAATATTCCAAAAGCGATCTGCTGCTGAGAGAAAGCGGATGGTGTTACTTGAAGCAGAAAAGTTAAGAGCACAGGCTAGAGTAATGCAAGCTCGCAGGGTGGCCAAGAAGGTATGCTACCAAAGAGAGAGTGAGACTAGAAAAAAGAAAGAGATGCTGGAAATTCGTCTTCAGAAGGCAAAAAGACAGCGTGCTGAGCACCTGAGAAAGAGAAGTAATGCCCACAATGTTGCTACTCGTGCAGACTGGATCAAGCACGGCAATCTTCTTTCAAAAAAATTAGCTTTATGCTGGAAGCAATTTGTAAGATCTAAAAGGACTACATTTGCTTTAGCTCAAGAATTCATGGCACTTGGAATTAATGAGAAAACTGTCAATTCTATGCCTTTTGAGCAGCTTGCTCATCTTATTGAGTCTGCCACAACACTTCAAACCGTTAAAGGTTTACTTGATCGGTTTGAAAGCCGTTTCTTACTTCATCAACCGTCCAGTTCATCGATCCCTGAAAACATAGATCATCTGCTTAAGCGCTTATCATCTCCAAGGAAAAAAACTTCTCCAGGTAAAACAAGTAGGTTTGTGGCTAATCGAGTTTCGACTTCTGGAGCAGTTAAATTATCCAGGTATCCAGTGAGGGCTGTTCTCTGTGCTTATATGATTTTGGGTCATCCAAGTGCAGTTTTCAGTGAACAGGGTGAACGTGAACTAGCACTTTCTGAGGCAGCTTTAGATTTGATTTGTCAGTTTGAGCTGTTAACCAAAGTCATCTTGGATGGCACTCATAGTGTTTTGGTGCCAAATCAGCCTTCAGCAGGCGTTCTATTTAATGAATTAGAGAATCCCAAAGAGTCTGCTATCCAATCTGCTCCAACAAAAACTTTCAGAAACCAGTTGTCAAAATTTGACTCAGTGTGGCGTTCTTATCTCTATTGCTTTGTTGTCTGGAAAGCCAAAGATGCTCGGTCACTGGAAGACGATATTGTTAGAGCAGCCTGCCAACTTGAGCTCTCAATGATGCAAATTTGCAAGCTAACTTCTGAAGGAGAACCGTCTAATTTAAGCCATGACATGAGACTTATTCAGAAACAGGTAACCGAAGATCAAAAACTTCTTAGAAAGAAAGTAGAGCATTTGAGTGGTAACGAAGGCCTTCATCGGATGGACTGTGCTTTGGCAGAGACACGATCTAAATACTTTGAAGGGAAAGAGACTTTGGCTCCTTTATCTAATCATGTTGCTCATCTTTCACCACCAACTAGCACCTTTTCTTCAATGAAACATGCGGATCCTGCCTCCAAGGAACAGTTTGTCGAGAAAAGAGGAAGTTCTAAGCATATTGCTCGCTCTTTATTTGGACACAGCTCCTTGCAATCTTTTCCAAATGATCAATTAAGTTCCACTGCATCTGGGCAGCGACTGCATTTAGAAAATGAGCTTCTTGTAAATGAAATAGTTCATACTGGTCGAAGCAATTTGGTTGATGGTTTGGATGCTCAAAATACACATGGAAACAGCATCAAGACAAAGGTTAAGGAGACCATGGAGAAGGCTTTCTGGGATGGGGTTGTGCAATCTGTGAGGAAAGAATTTTCTGATTATAACCATATCATCGAACTTGTGGAGGAGGTGCGGGATGAACTAAGTAGCTTGGCTCCTCTCAGCTGGAAGCAAGAAATTCATGACAGCATAGATACTGATATTTTATCACAGGTGATAAAGTCAGGAACTCATGATAAAGATTTTCTTGGAAGGATTTTGGAGTATGCTTTGCATACATTGAGGAAATTGTCTGCTCCTGCAAATGAGAATGATTTGAAGAAGTCTCATGAGAAGCTATTAAAAGATTTGTCTTTAATTGTTGAGTCGGGTGATGATAAAAAAGGCTCTTTTATTATTTCAATGATTAAAGGTCTCCGCTTTGTTCTAGAGGAGATCCAGGCTCTTAAAAAGGTGATTAGCAAGACACGTATTCAAATGATAGAACCGATCATAAAGGGTGCTGCAGGTTTTGAGTATCTGCAGAAGGCATTTGGTGATCGCTATGGTCCGCCTTCCAGTGCTGCTGCCACACTCACCCTAACAAAACAATGGCTATCTCCTTTGAAAAATAATGCAGAAGCAGAATGGGATGAACACGTTGAATCTCTCTCACTGTTGCCTGAAAGCCATGCCCTTCCTCCTATCACAGCTATACGAACTGGCGGTAAAATACCTCAGGCTCATAGGGAGCCTCCTCACCCCGCTGAAGCACTTTGTGCAAGTGATGGGCAGCTAGAATGCACCGGCGAAAAACTCGATATAATGCTGAGGCTCGGATTGTTAAAACTTGCAAGCAGCATGGAGCGACTGATTACTGATACGCTGCCTGAAACCATGAAGCTGAATGCCTTGCGATTGAGCTCACTTCAGAATCAACATCAACAGATTATAGTCATTTCCACGAGCATCTTGGTTCTTCGCCAAATTATCATCGGCGAAAAGCTGGCGTCCTCTCCGGCGCATCTGGATTCAATCGTATCCGATGCGATTGTCCGTCTCTCGGATCTTCTGGACAAGGATTGCGACGTCGGCCTGCAAAAGATCATAGAAACGATAGCCGGCTCGTTCCCGGAGGACGATGGAGATGATGCTGAAAGAAGAAAGCGGCTGATGGAGAGGATGCTGATGAAGAGCTTGGAGAGCGACGATGCGGTGTTCGGGAAGGTGAACCGCTCCGTCTATCTTGCGATCCGGACAGTCCTTTTCGGGGGGACGGGGAATCGCGGCCGGAGCGCGGCGCTGGCGATTCTGCACAAGGTCGGCGCTCCCATGCTGCTGGATAGGGTTGCTAGGGTTGCGGAGGAGCTGGTCGTTATGGCGAAAGTCTCCCTCAAAATTCACGGCCCGTGGTACCGGTTCTTGCTCTGAAGTTTTTGGGTTTCTCGTTCTTTTGTACATATAGTACTTAGTTGTAAAGCAGCTTCCCATGCCGTTCACGACTCTTTTTTTTTTCCTTTCTTATATATATTTAACATGCATGCATCAGCCTTGCTTCACTCTCACATCCATTTAATATATGGAAACCCATTATTCCCACTGCATTAGTGCAAAACGGTAAAAAGCCCAGCGAACCTGAAGCAATTACATACAAGTAAATGGCATACGCAATCATTTCTCCACGAATCCTTCCATGTAACCCTTGCCAGATTCGTATTCACTGGTCCATTAATTTTATAATAAATGAGTACACCACTTCTAAGACTTGAAATGATTCTTGTCACTTAAATTTATTATTTCAGCTGATT

Network for GWHGAAEX012421

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05794.12	Tcp11	677	1162	1.60E-64

Protein Sequence

>GWHPAAEX012421
MEAANGVDMPEAARATAIAFDFSAGEPSSTPPKMPRKIRKRLLECRSSPPSSVEEIEAKLKEADLRRRQFHEWLSSKARPKQRSPSWSSQQEPGQRLEAKLNAAEQKRLFLLENAQMRLARLDELRQAAKCCVEMRFEKQREELGSRVEYRVQQAEANRMQLYKAHMQKCAAAQERKSRYLLQRTLQENKYKERILSAIFQKRSAAERKRMVLLEAEKLRAQARVMQARRVAKKVCYQRESETRKKKEMLEIRLQKAKRQRAEHLRKRSNAHNVATRADWIKHGNLLSKKLALCWKQFVRSKRTTFALAQEFMALGINEKTVNSMPFEQLAHLIESATTLQTVKGLLDRFESRFLLHQPSSSSIPENIDHLLKRLSSPRKKTSPGKTSRFVANRVSTSGAVKLSRYPVRAVLCAYMILGHPSAVFSEQGERELALSEAALDLICQFELLTKVILDGTHSVLVPNQPSAGVLFNELENPKESAIQSAPTKTFRNQLSKFDSVWRSYLYCFVVWKAKDARSLEDDIVRAACQLELSMMQICKLTSEGEPSNLSHDMRLIQKQVTEDQKLLRKKVEHLSGNEGLHRMDCALAETRSKYFEGKETLAPLSNHVAHLSPPTSTFSSMKHADPASKEQFVEKRGSSKHIARSLFGHSSLQSFPNDQLSSTASGQRLHLENELLVNEIVHTGRSNLVDGLDAQNTHGNSIKTKVKETMEKAFWDGVVQSVRKEFSDYNHIIELVEEVRDELSSLAPLSWKQEIHDSIDTDILSQVIKSGTHDKDFLGRILEYALHTLRKLSAPANENDLKKSHEKLLKDLSLIVESGDDKKGSFIISMIKGLRFVLEEIQALKKVISKTRIQMIEPIIKGAAGFEYLQKAFGDRYGPPSSAAATLTLTKQWLSPLKNNAEAEWDEHVESLSLLPESHALPPITAIRTGGKIPQAHREPPHPAEALCASDGQLECTGEKLDIMLRLGLLKLASSMERLITDTLPETMKLNALRLSSLQNQHQQIIVISTSILVLRQIIIGEKLASSPAHLDSIVSDAIVRLSDLLDKDCDVGLQKIIETIAGSFPEDDGDDAERRKRLMERMLMKSLESDDAVFGKVNRSVYLAIRTVLFGGTGNRGRSAALAILHKVGAPMLLDRVARVAEELVVMAKVSLKIHGPWYRFLL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	121.940
SRP064423	SRR2545915	Juvenile tuber	110.550
SRP108465	SRR5643513	five period of Gastrodia elata	91.740
	SRR5643514	five period of Gastrodia elata	89.170
	SRR5643515	five period of Gastrodia elata	101.950
	SRR5643524	five period of Gastrodia elata	93.100
	SRR5643525	five period of Gastrodia elata	158.370
	SRR5643528	five period of Gastrodia elata	162.350
	SRR5643658	five period of Gastrodia elata	159.580
	SRR5643659	five period of Gastrodia elata	82.310
	SRR5643660	five period of Gastrodia elata	93.330
	SRR5643661	five period of Gastrodia elata	90.160
	SRR5643662	five period of Gastrodia elata	94.290
	SRR5643663	five period of Gastrodia elata	104.510
	SRR5643664	five period of Gastrodia elata	105.260
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	93.260
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	81.750
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	90.480
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	108.520
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	130.350
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	143.260
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	102.060
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	129.420
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	66.170
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	84.610
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	73.160
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	73.160
SRP279888	Gastro	Gastrodia elata tuber	102.24
	Juven	Juvenile tuber	159.69
	Mother_Gastro	Mother tuber of Gastrodia elata	325.73
	Mother_Juven	Mother tuber of Juvenile	328.78