Gene detail

Detail information of GWHGAAEX012423/evm.TU.scaffold_43.42_evm.TU.scaffold_43.43

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|336121507\|ref\|YP_004576282.1\|	6.00E-171	AAA family ATPase [Methanothermococcus okinawensis IH1]
KOG	KOG0733	0	Nuclear AAA ATPase (VCP subfamily)
nr	gi\|672126121\|ref\|XP_008786500.1\|	0	PREDICTED: calmodulin-interacting protein 111 [Phoenix dactylifera]
Swissprot	tr\|Q9LET7\|CI111_ARATH	0	Calmodulin-interacting protein 111
trEMBL	tr\|I1IMI4\|I1IMI4_BRADI	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:BRADI4G22080.1}
TAIR	AT3G56690	0	Cam interacting protein 111

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000039	1503476	1562180	+

Transcript Sequence
>GWHTAAEX012423 AGTATTTATTAGGGTATTGAATTATTTTAAGAAACCGTGCACTTTTCGTCTTCACTGCTAACAGTGCCCCGCAGCAAGAGCTCGGGCCAGTTTCGAGATGTCTTCTAAGGGTAAAAAACAATCGAAGTCCTCACTTGGACGCTCTCCGGCCTCTCGATCACCGGTGACTCATTACCGTGAGTCGATGAGCAGTGCTACTCAAGAGTCATTTAACAGGCGATTACTATCTGACGCCGCTTCTCGGTTCCCTTACTTAATATCCGAAGCAGCCTTCCGTGGAGAAGTGTGTAGCACCGATACTTCGCCCTCCAATGGCAGTCAATCTAGAATTTGGCTCTCGGAGGCTTTTATGGTCTCCTCCTCCCTTCGCCCTGGCTCTATTGTCTCAGTTGCACTTGCTGCATCAGGTGAAGAACCTTCGGACAAATTCCCACTACACAATATTGTGGAGAACACAAATGCATATTTTGGAATTGATGTTGGCAGTGATTGCTTAAATAATGTGGGGTGTTATTTTGCTATTGCCAATGTGTTTTCTTCTAGTAAGATTCAAAAGAATGGAGTAAGGCTATCGTGGGGCCTTTCCTGCACAATGGGTTTTCCTGCAACTGGCAGATCGTTATTTATTTTTCCCATTGGAGATTTCTCAAGTTGTCACAATGAAAGCGATAAAAAAGGCCTTCACTTGCACACCTGCAGGAATTTAAAACTGAATGTGCTTCCAATTAATTTTCATGATAGTTTACCTACCAGCAGCAGTTCAACAGAGCTTCCTTCAACTTTATCCTCGCTACTATTAAAAAATTCTTCTACATGCTTTGATGTGTCAACAATGAAGTTGGTATTGAACGATAAAGAATATAAATCATTGTATGAGAAATTTGTATCTCATTGGCTTTGTAGAAGATTTTTGCTTTATGGAAACATTGTGGCTATTCCTGTATGTGGAAGAGTTTTGTTATTTTCTGTGGAAGTTGCAGATGAGTTAACAACAAGAAGCTCTTGTCAAGATTCAATTTTTGAAAGGAAGAGTAATATGCTGATTGATGAGACTGAGAGGGCTACCTTTTATGATAAACGGTGCACTGTTCTCCTTGTGGAAGCCAAAACAAAACTTGTTTTCTCTGGTTTCACATCTACTGCTTGCGAAAGCTCAAGTGGAAGCATCTTTTCTGGAGGGAATAAATCTGAATTTTTTGGTGGCAAGGAACCAAGTGATATACCAATATTGGGTGGTTTGTCAAGAGAATTTGATGATTTGGAAGAGATTATTAAATTTTCTTTAGCACACACGGATCCTTTACTAAGGTACACTGGAGTACTTCTTTATGGCCCACCTGGTACAGGGAAAACAACCTTGGCTTTAAGCTGCATTCGTCATGCTGGTGCTCGCCTTTTTGTGGTCAATGGGCCTGAAATCTTTAGTCAGTATTATGGTGAAAGTGAGCAAACATTACATGACATTTTTGATTCAGCAAATAAAGCTGCTCCAGCTGTGGTTTTCATTGATGAATTGGATGCCATTGCTCCAGCACGAAAGGATGGAAGTGAAGAGTTATCTATTAGAGTGGTTGCAACCTTGCTAAAATTGATGGATGATATCAAAAGATCATATGGAGTTCTTGTAATTGCTGCTACCAATCTACCTGATAGTATTGATCCTGCATTGAGACGACCTGGCAGATTTGATCGAGAATTCGAGATAGGAGTGCCATCTCCAGTCCAGCGGCTAGATATATTGCATGCTCTTCTCAACAATATGGATCATTCGCTCAGTAACACACAGCTTGAATCATTGGCTTTTGATACACATGGTTTTGTTGGTGCTGATTTAGCTTCCTTATGCAATGAAGCAGCAATGACAACTCTTCGGCGCATTATAGACTTGCAATCATTTGAAAAGCCTTTAAAGTGCTCACATTCCAAAACTTGTGCAGTTGATAAGAAATGTCCTAACGACCAGAAAATTGAAGAGGCATTGCATCATGATGATTTGAATTCTCTATCATCATTGTTATCAGAATTGAGTGTGTCATCAATATCTGATTGTTCTTCAAGTATGTGTGACGATGAAGAACAAAAGATAACTGCTAAAGATTTTGAAGTCGCAAGAATGAAAGTGAGGCCTAGTGCTTTGCGTGAGGTAATGCTTGAACTCCCCAAAGTTTGTTGGGGGGATGTTGGTGGCCAAGAGGAGGTAAAAAGGCACTTGATTGAAACAGTTCAATGGCCTCAAATGTATCCAAATGCTTTCACAAACATCGGGATTCCGCCTTCTAGGGGACTATTATTAGTTGGCCCTCCTGGCTGCAGTAAAACCATGTTGGCTCGTGCCGTAGCTTCGGAAGCAAAGTTGAATTTCCTTGCAGTTAAGGGTCCTGAACTTTTTAGCAAATGGGTTGGGGAATCTGAGAAAGCTGTGAGGTCACTCTTTGCAAAAGCAAGAGCCAACTCTCCTGCAATTATATTCTTTGATGAAATTGACGGTCTTGCAGTAACTCGTGGAGCAGAGAATGATGGTTTATCTGTTGCTGACCGGGTTCTGAGCCAATTTTTAGTCGAAATGGATGGCATTGATGAAGGAGCGAGAGTTATAGTCATTGCAGCTACTAATCGCCCTGACAAGATAGATCCTGCGCTTCTAAGGCCAGGGCGGTTTGACATGATTTTGAATGTTCCACCACCAGATGAATTGGATAGGGAGGATATATTTCGGGTACACACACGAGGTGTACCTTGTAGGTCAGACGTTAGTCTAAAGGAGCTTGCATGCCTTACCACAGGATATACTGGAGCGGATATAAAGCTTGCTTGCCGAGAGGCTGCTACTGCGGCACTAGAAGAAAACCTGTGCATATCTGAACTCTCCATGGAACATTTCAGGATTGGGATCGGAAGGGTTCGGCCTTCAGAAGTTGATTTCTACCAGAAACTAGCAGAGCAGTTCCGGAGGTGTTGATCGGTGTTCTTTCCAACAATCTGGTATGGCATCAAATTGATATGTTTTTTAAAATATTTACAAATTTTATCCAACGCCTAGATCCTTACTATTTACAAATAAAGCAATCAATCTTAGAATTATTTTAATTATAAGTTAATATGAGGCATCATATATTTTAGAAAATAGAAATGCTGAGGGATGAAAGGGGCCTTTTTGTAAATATTAAACTTTGGGTCTGATTATGTATATTTTCAAGTTTTGGTGATATGCAGGTGAAGATTTTATTTTTTCCTTATGATATTTTCTTAATTAAAATATATCATGAAATGCATTTTTTGCATGAGACCCTTTGAAAAATTTCAGTTTATTTAGTATTTATTTTCTAATTTTTTGAG

Network for GWHGAAEX012423

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00004.28	AAA	408	537	2.40E-41
PF00004.28	AAA	730	861	2.20E-42

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	10.740
SRP064423	SRR2545915	Juvenile tuber	10.530
SRP108465	SRR5643513	five period of Gastrodia elata	3.760
	SRR5643514	five period of Gastrodia elata	4.000
	SRR5643515	five period of Gastrodia elata	3.480
	SRR5643524	five period of Gastrodia elata	3.330
	SRR5643525	five period of Gastrodia elata	3.160
	SRR5643528	five period of Gastrodia elata	2.810
	SRR5643658	five period of Gastrodia elata	4.020
	SRR5643659	five period of Gastrodia elata	4.000
	SRR5643660	five period of Gastrodia elata	4.450
	SRR5643661	five period of Gastrodia elata	4.310
	SRR5643662	five period of Gastrodia elata	4.630
	SRR5643663	five period of Gastrodia elata	4.390
	SRR5643664	five period of Gastrodia elata	5.220
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.740
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.920
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.340
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.830
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.320
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	7.310
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.440
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.520
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.550
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.010
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.220
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.220
SRP279888	Gastro	Gastrodia elata tuber	5.68
	Juven	Juvenile tuber	7.27
	Mother_Gastro	Mother tuber of Gastrodia elata	4.75
	Mother_Juven	Mother tuber of Juvenile	5.72