Detail information of GWHGAAEX012426/evm.TU.scaffold_43.50
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 3.00E-52 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| nr | gi|743816186|ref|XP_010930574.1| | 0 | PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Elaeis guineensis] |
| Swissprot | tr|Q9M2Z1|BAME2_ARATH | 0 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 (Precursor) |
| trEMBL | tr|B9SKD2|B9SKD2_RICCO | 0 | Receptor protein kinase CLAVATA1, putative {ECO:0000313|EMBL:EEF35946.1} |
| TAIR | AT3G49670 | 0 | Leucine-rich receptor-like protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000039 | 1801643 | 1806123 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012426
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 27 | 65 | 1.40E-10 |
| PF00560.32 | LRR_1 | 113 | 135 | 0.069 |
| PF13855.5 | LRR_8 | 233 | 293 | 1.10E-08 |
| PF00560.32 | LRR_1 | 453 | 475 | 0.13 |
| PF13855.5 | LRR_8 | 477 | 535 | 3.80E-09 |
| PF00069.24 | Pkinase | 679 | 945 | 1.40E-41 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-XI-1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.400 |
| SRR2545915 | Juvenile tuber | 2.160 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.700 |
| SRR5643514 | five period of Gastrodia elata | 2.250 | |
| SRR5643515 | five period of Gastrodia elata | 2.650 | |
| SRR5643524 | five period of Gastrodia elata | 1.740 | |
| SRR5643525 | five period of Gastrodia elata | 5.480 | |
| SRR5643528 | five period of Gastrodia elata | 3.920 | |
| SRR5643658 | five period of Gastrodia elata | 4.360 | |
| SRR5643659 | five period of Gastrodia elata | 3.170 | |
| SRR5643660 | five period of Gastrodia elata | 3.030 | |
| SRR5643661 | five period of Gastrodia elata | 4.160 | |
| SRR5643662 | five period of Gastrodia elata | 5.470 | |
| SRR5643663 | five period of Gastrodia elata | 5.020 | |
| SRR5643664 | five period of Gastrodia elata | 4.770 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.990 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.090 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.120 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.080 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.100 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.730 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.900 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.740 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.360 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.880 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.410 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.410 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.87 |
| Juven | Juvenile tuber | 3.08 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.63 | |
| Mother_Juven | Mother tuber of Juvenile | 0.82 |