Detail information of GWHGAAEX012430/evm.TU.scaffold_43.56


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|336122329|ref|YP_004577104.1|1.00E-11hypothetical protein Metok_1361 [Methanothermococcus okinawensis IH1]
KOGKOG42342.00E-75TPR repeat-containing protein
nrgi|743768770|ref|XP_010914662.1|6.26E-97PREDICTED: tetratricopeptide repeat protein 1-like [Elaeis guineensis]
Swissprottr|Q9SIN1|TTL3_ARATH5.00E-17Inactive TPR repeat-containing thioredoxin TTL3
trEMBLtr|A0A061GPV3|A0A061GPV3_THECC2.00E-93Tetratricopeptide repeat (TPR)-like superfamily protein {ECO:0000313|EMBL:EOY31556.1}
TAIRAT4G304802.00E-75Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003920280292085303-
Transcript Sequence

Network for GWHGAAEX012430

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00515.27TPR_12322613.30E-08
PF07719.16TPR_22652941.20E-05
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms109.990
SRR2545915Juvenile tuber74.090
SRP108465SRR5643513five period of Gastrodia elata40.450
SRR5643514five period of Gastrodia elata35.050
SRR5643515five period of Gastrodia elata35.820
SRR5643524five period of Gastrodia elata39.230
SRR5643525five period of Gastrodia elata36.170
SRR5643528five period of Gastrodia elata43.990
SRR5643658five period of Gastrodia elata39.640
SRR5643659five period of Gastrodia elata27.980
SRR5643660five period of Gastrodia elata37.760
SRR5643661five period of Gastrodia elata38.060
SRR5643662five period of Gastrodia elata42.110
SRR5643663five period of Gastrodia elata31.240
SRR5643664five period of Gastrodia elata39.460
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_135.210
SRR6049655Rhizomagastrodiae_C368-T10_good_130.220
SRR6049656Rhizomagastrodiae_C368-T07_good_131.100
SRR6049657Rhizomagastrodiae_C368-T07_good_136.940
SRR6049658Rhizomagastrodiae_C368-T04_good_130.710
SRR6049659Rhizomagastrodiae_C368-T04_good_137.160
SRR6049660Rhizomagastrodiae_C368-T01_good_131.890
SRR6049661Rhizomagastrodiae_C368-T04_good_134.200
SRR6049662Rhizomagastrodiae_C368-T01_good_135.590
SRR6049663Rhizomagastrodiae_C368-T01_good_132.950
SRR6049664Rhizomagastrodiae_C368-T10_good_140.790
SRR6049665Rhizomagastrodiae_C368-T10_good_140.790
SRP279888GastroGastrodia elata tuber 49.58
JuvenJuvenile tuber48.81
Mother_GastroMother tuber of Gastrodia elata 50.98
Mother_JuvenMother tuber of Juvenile 56.66