Detail information of GWHGAAEX012434/evm.TU.scaffold_43.62
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|320159427|ref|YP_004172651.1| | 5.00E-21 | putative DNA glycosylase [Anaerolinea thermophila UNI-1] |
| nr | gi|743764052|ref|XP_010912229.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: transcriptional activator DEMETER-like [Elaeis guineensis] |
| Swissprot | tr|Q8LK56|DME_ARATH | 0 | Transcriptional activator DEMETER |
| trEMBL | tr|B8AAK8|B8AAK8_ORYSI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:EEC70183.1} |
| TAIR | AT3G10010 | 5.00E-167 | demeter-like 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000039 | 2302117 | 2324492 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012434
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF15629.5 | Perm-CXXC | 1765 | 1794 | 4.20E-10 |
| PF15628.5 | RRM_DME | 1799 | 1899 | 1.80E-51 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006284 | Biological Process | base-excision repair |
| GO:0006281 | Biological Process | DNA repair |
| GO:0051539 | Molecular Function | 4 iron, 4 sulfur cluster binding |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 19.290 |
| SRR2545915 | Juvenile tuber | 35.450 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 20.430 |
| SRR5643514 | five period of Gastrodia elata | 29.020 | |
| SRR5643515 | five period of Gastrodia elata | 24.230 | |
| SRR5643524 | five period of Gastrodia elata | 28.950 | |
| SRR5643525 | five period of Gastrodia elata | 17.830 | |
| SRR5643528 | five period of Gastrodia elata | 18.490 | |
| SRR5643658 | five period of Gastrodia elata | 17.160 | |
| SRR5643659 | five period of Gastrodia elata | 17.330 | |
| SRR5643660 | five period of Gastrodia elata | 19.210 | |
| SRR5643661 | five period of Gastrodia elata | 16.750 | |
| SRR5643662 | five period of Gastrodia elata | 17.190 | |
| SRR5643663 | five period of Gastrodia elata | 18.700 | |
| SRR5643664 | five period of Gastrodia elata | 14.360 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 19.440 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 25.430 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 23.750 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.610 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 13.110 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 11.280 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 15.580 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 14.600 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 27.350 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 25.810 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 28.160 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 28.160 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 11.04 |
| Juven | Juvenile tuber | 18.39 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 27.30 | |
| Mother_Juven | Mother tuber of Juvenile | 26.86 |