Detail information of GWHGAAEX012436/evm.TU.scaffold_43.70
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672131466|ref|XP_008789295.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At4g33170 [Phoenix dactylifera] |
| Swissprot | tr|Q9SMZ2|PP347_ARATH | 0 | Pentatricopeptide repeat-containing protein At4g33170 |
| trEMBL | tr|F6H2T7|F6H2T7_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB46622.1} |
| trEMBL | tr|F6H2T7|F6H2T7_VITVI | 2.00E-52 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB46622.1} |
| TAIR | AT4G33170 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000039 | 2870300 | 2873275 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012436
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 79 | 104 | 0.0096 |
| PF01535.19 | PPR | 107 | 133 | 0.0031 |
| PF01535.19 | PPR | 181 | 207 | 0.056 |
| PF01535.19 | PPR | 209 | 236 | 0.0021 |
| PF01535.19 | PPR | 352 | 378 | 0.031 |
| PF13041.5 | PPR_2 | 379 | 426 | 8.30E-10 |
| PF01535.19 | PPR | 454 | 479 | 0.029 |
| PF13041.5 | PPR_2 | 581 | 628 | 2.30E-09 |
| PF01535.19 | PPR | 655 | 682 | 0.021 |
| PF13041.5 | PPR_2 | 684 | 730 | 2.90E-10 |
| PF12854.6 | PPR_1 | 751 | 782 | 1.60E-05 |
| PF14432.5 | DYW_deaminase | 857 | 981 | 2.80E-38 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.990 |
| SRR2545915 | Juvenile tuber | 2.270 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.770 |
| SRR5643514 | five period of Gastrodia elata | 4.570 | |
| SRR5643515 | five period of Gastrodia elata | 5.120 | |
| SRR5643524 | five period of Gastrodia elata | 4.950 | |
| SRR5643525 | five period of Gastrodia elata | 2.270 | |
| SRR5643528 | five period of Gastrodia elata | 1.360 | |
| SRR5643658 | five period of Gastrodia elata | 1.210 | |
| SRR5643659 | five period of Gastrodia elata | 7.670 | |
| SRR5643660 | five period of Gastrodia elata | 6.730 | |
| SRR5643661 | five period of Gastrodia elata | 8.240 | |
| SRR5643662 | five period of Gastrodia elata | 7.580 | |
| SRR5643663 | five period of Gastrodia elata | 7.210 | |
| SRR5643664 | five period of Gastrodia elata | 6.370 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.590 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.860 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.620 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.390 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.660 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.200 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.900 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.360 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.180 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.880 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.600 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.600 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.02 |
| Juven | Juvenile tuber | 3.80 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.30 | |
| Mother_Juven | Mother tuber of Juvenile | 1.63 |