Detail information of GWHGAAEX012439/evm.TU.scaffold_43.73
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|262198435|ref|YP_003269644.1| | 2.00E-58 | pyridoxal phosphate-dependent enzyme, D- cysteine desulfhydrase family [Haliangium ochraceum DSM 14365] |
| nr | gi|645270273|ref|XP_008240383.1| | 5.11E-178 | PREDICTED: probable 1-aminocyclopropane-1-carboxylate deaminase [Prunus mume] |
| Swissprot | tr|Q6ZHE5|DCYD1_ORYSJ | 2.00E-166 | Putative D-cysteine desulfhydrase 1, mitochondrial (Precursor) |
| trEMBL | tr|K3YT89|K3YT89_SETIT | 2.00E-177 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si017484m} |
| TAIR | AT1G48420 | 5.00E-154 | D-cysteine desulfhydrase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000039 | 2908546 | 2967296 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012439
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00291.24 | PALP | 39 | 314 | 8.20E-31 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K05396 | dcyD | Metabolic pathways | map01100 |
| Cysteine and methionine metabolism | map00270 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 27.830 |
| SRR2545915 | Juvenile tuber | 59.010 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 71.710 |
| SRR5643514 | five period of Gastrodia elata | 93.370 | |
| SRR5643515 | five period of Gastrodia elata | 75.310 | |
| SRR5643524 | five period of Gastrodia elata | 88.110 | |
| SRR5643525 | five period of Gastrodia elata | 31.460 | |
| SRR5643528 | five period of Gastrodia elata | 22.200 | |
| SRR5643658 | five period of Gastrodia elata | 24.940 | |
| SRR5643659 | five period of Gastrodia elata | 29.280 | |
| SRR5643660 | five period of Gastrodia elata | 37.130 | |
| SRR5643661 | five period of Gastrodia elata | 27.100 | |
| SRR5643662 | five period of Gastrodia elata | 31.680 | |
| SRR5643663 | five period of Gastrodia elata | 33.800 | |
| SRR5643664 | five period of Gastrodia elata | 34.470 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 65.670 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 47.390 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 72.970 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 51.850 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 36.200 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 40.910 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 50.870 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 36.660 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 55.960 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 50.410 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 75.990 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 75.990 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 38.76 |
| Juven | Juvenile tuber | 65.01 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 11.52 | |
| Mother_Juven | Mother tuber of Juvenile | 16.44 |