Detail information of GWHGAAEX012440/evm.TU.scaffold_43.75
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0483 | 3.00E-62 | Transcription factor HEX, contains HOX and HALZ domains |
| nr | gi|657999419|ref|XP_008392143.1| | 3.13E-64 | PREDICTED: homeobox-leucine zipper protein HAT14-like [Malus domestica] |
| Swissprot | tr|P46665|HAT14_ARATH | 2.00E-61 | Homeobox-leucine zipper protein HAT14 |
| trEMBL | tr|A0A068URD4|A0A068URD4_COFCA | 4.00E-64 | Coffea canephora |
| TAIR | AT5G06710 | 3.00E-62 | homeobox from Arabidopsis thaliana |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000039 | 3127086 | 3154781 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012440
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00046.28 | Homeobox | 106 | 160 | 4.00E-15 |
| PF02183.17 | HALZ | 162 | 196 | 3.30E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB-HD-ZIP |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 7.920 |
| SRR2545915 | Juvenile tuber | 11.300 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.480 |
| SRR5643514 | five period of Gastrodia elata | 4.220 | |
| SRR5643515 | five period of Gastrodia elata | 5.800 | |
| SRR5643524 | five period of Gastrodia elata | 4.480 | |
| SRR5643525 | five period of Gastrodia elata | 3.270 | |
| SRR5643528 | five period of Gastrodia elata | 3.370 | |
| SRR5643658 | five period of Gastrodia elata | 4.060 | |
| SRR5643659 | five period of Gastrodia elata | 24.690 | |
| SRR5643660 | five period of Gastrodia elata | 19.600 | |
| SRR5643661 | five period of Gastrodia elata | 17.930 | |
| SRR5643662 | five period of Gastrodia elata | 12.030 | |
| SRR5643663 | five period of Gastrodia elata | 14.750 | |
| SRR5643664 | five period of Gastrodia elata | 14.340 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 14.240 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.700 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.080 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.700 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 5.280 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.950 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.480 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.190 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.750 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.980 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.980 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 28.63 |
| Juven | Juvenile tuber | 10.11 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.04 | |
| Mother_Juven | Mother tuber of Juvenile | 2.98 |